View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_high_3 (Length: 640)
Name: NF15422_high_3
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 158 - 521
Target Start/End: Original strand, 3108344 - 3108701
Alignment:
| Q |
158 |
ggaatgcaccaaaatttagcatctctcttacggacagaaaatttttgatatccccatattataggtannnnnnnnnnnnnnnnnnnacaaattaaaacaa |
257 |
Q |
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| T |
3108344 |
ggaatgcaccaaaatttagcatctctcttacggacagaaaaaatttgatatccccatattataggtattttatttttttt------acaaattaaaacaa |
3108437 |
T |
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| Q |
258 |
aagttcatctccacctcaatacccgaaacaatttaagaaaaaagtgactctaaatctcattgagtggacctcaatgccattttatcacaataggttaata |
357 |
Q |
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| T |
3108438 |
aagttcatctccacctcaatacccgaaacaatttaagaaaaaagtgactctaaatctcattgagtggacctcaatgccattttatcacaataggttaata |
3108537 |
T |
|
| Q |
358 |
aataaataaataatgataactctaagggtttgtatagactatagtgataacaaaatataatggggtaacatttgggtgacataactctcttaaatagctc |
457 |
Q |
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| T |
3108538 |
aataaataaataatgataactctaaggatttgtatagactatggtgataacaagatataatgggataacatttgggtgacataactctcttaaatagttc |
3108637 |
T |
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| Q |
458 |
tctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatgcattaataa |
521 |
Q |
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| T |
3108638 |
ttttgactaaataatatattttaatcatttattcgtcattctcttttctaaaatgcattaataa |
3108701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 3108775 - 3108864
Alignment:
| Q |
533 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttgtgccttcaatttttgtgtatgtaggttttcaggggaaaag |
622 |
Q |
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| T |
3108775 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttatgtcttcaatttttgtgtatgtaggttttcaggggaaaag |
3108864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 32279353 - 32279307
Alignment:
| Q |
455 |
ctctctcgtctaaataatatattttaattattcgttcatcattttct |
501 |
Q |
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| T |
32279353 |
ctctctcatttaaataatttattttaattattcattcatcattttct |
32279307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 27554981 - 27554936
Alignment:
| Q |
456 |
tctctcgtctaaataatatattttaattattcgttcatcattttct |
501 |
Q |
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| T |
27554981 |
tctctcatctaaataatctattttaattatttattcatcattttct |
27554936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 42467011 - 42466974
Alignment:
| Q |
460 |
tcgtctaaataatatattttaattattcgttcatcatt |
497 |
Q |
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| T |
42467011 |
tcgtctaaataatttattttaattattcattcatcatt |
42466974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 50700046 - 50700103
Alignment:
| Q |
455 |
ctctctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatg |
512 |
Q |
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| T |
50700046 |
ctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatg |
50700103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 503
Target Start/End: Complemental strand, 53406540 - 53406500
Alignment:
| Q |
463 |
tctaaataatatattttaattattcgttcatcattttcttt |
503 |
Q |
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| T |
53406540 |
tctaaataatttattttaattatttattcatcattttcttt |
53406500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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