View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15422_high_4 (Length: 513)
Name: NF15422_high_4
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 8e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 186 - 352
Target Start/End: Original strand, 37310429 - 37310595
Alignment:
| Q |
186 |
ccttcacgtttttcattgatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtgcaagcatcgtccgaatttctttgtg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37310429 |
ccttcacgtttttcattgatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtgcaagcatcgtcagaatttctttgtg |
37310528 |
T |
|
| Q |
286 |
agttgaaggtcttaacacatgttcatcacttgaatctggtataccatccttttaaacatcttaagtc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37310529 |
agttgaaggtcttaacacatgttcatcacttgaatctggtataccatccttttaaacatcttaagtc |
37310595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 37238532 - 37238695
Alignment:
| Q |
186 |
ccttcacgtttttcattgatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtgcaagcatcgtccgaatttctttgtg |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
37238532 |
ccttcacgtttt-cattgatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtacaagcatcgtccgaatttctctgtg |
37238630 |
T |
|
| Q |
286 |
agttgaaggtcttaacacatgttcatcacttgaatctggtataccatccttttaaacatcttaag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37238631 |
agttgaaggtcttaacacatgttcatcacttgaatctggtataccatccttttaaaaatcttaag |
37238695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37238346 - 37238465
Alignment:
| Q |
1 |
ataaaattggtcaaggtggatttggagctgtctattatgcagaacttagaggcgaggtacgaaactacatgaatttgtttaatagagtgtactttgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37238346 |
ataaaattggtcaaggtggatttggagctgtctattatgcagaacttagaggcgaggtacgaaactacatgaatttgtttaatagagtgtactttgattt |
37238445 |
T |
|
| Q |
101 |
tagttttgaacaagttctat |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37238446 |
tagttttgaacaagttctat |
37238465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37310240 - 37310359
Alignment:
| Q |
1 |
ataaaattggtcaaggtggatttggagctgtctattatgcagaacttagaggcgaggtacgaaactacatgaatttgtttaatagagtgtactttgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37310240 |
ataaaattggtcaaggtggatttggagctgtctattatgcagaacttagaggcgaggtacgaaactacatgaatttgtttaatagagtgtactttgattt |
37310339 |
T |
|
| Q |
101 |
tagttttgaacaagttctat |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37310340 |
tagttttgaacaagttctat |
37310359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 37238742 - 37238841
Alignment:
| Q |
397 |
ggtttgaagaatcatcgtttaactacaaagcaaataaccagtgtta-ttttgagaacataacaactctataactatcaagcaaaacataatctgtagtag |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37238742 |
ggtttgaagaatcatcgtttaactacaaagcaaataaccagtgttagttttgagaacataagaactctataactatcaagcaaaacataatctgtagtag |
37238841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 33595042 - 33594936
Alignment:
| Q |
203 |
gatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtgcaagcatcgtccgaatttctttgtgagttgaaggtcttaaca |
302 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||| |||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
33595042 |
gatttcctctcatacaatttattctatgcagaaaatagcagttaagaagatggatgtacaagcatcaatagattttctttgtgagttgaaggtcttaaca |
33594943 |
T |
|
| Q |
303 |
catgttc |
309 |
Q |
| |
|
||||||| |
|
|
| T |
33594942 |
catgttc |
33594936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 33594852 - 33594794
Alignment:
| Q |
399 |
tttgaagaatcatcgtttaactacaaagcaaataaccagtgttattttgagaacataac |
457 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33594852 |
tttgaagaatcatcattcaactacaaagcaaataacgagtgttattttgagaacataac |
33594794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University