View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_high_5 (Length: 466)
Name: NF15422_high_5
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 32527978 - 32528414
Alignment:
| Q |
11 |
cataggcgctttcgagccaaacaaaaccataactaagaatcacggaagtgaaaaggtcttgatacataaaatgaccgataaccaatcgcatatccaaaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32527978 |
cataggcgctttcgagccaaacaaaaccataactaagaatcacggaagcgaaaaggtcttgatacataaaatgaccgataaccaatcacatatccaaaat |
32528077 |
T |
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| Q |
111 |
gagggatcgacaaatctgagcaccataaatagtaaaacgacaacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggca |
210 |
Q |
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| T |
32528078 |
gagggatcgacaaatctgagcaccataaatagtaaaacgacgacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggca |
32528177 |
T |
|
| Q |
211 |
ataaaccaaacgccttgaaagttgtagatttggaaagaaccagaaatcagaggcaagaaatacaaccacaaactaaagatttcaaactgaacctacctag |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32528178 |
ataaaccaaacgccttgaaagttgtagatctggaaagaaccagaaatcagaggcaagaaatacagccacaaactaaagatttcaaactgaacctacctag |
32528277 |
T |
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| Q |
311 |
atggggnnnnnnnnnccaaaaccactgacgtaaccgccagagttctgaaataacaatggacaaacattcatcttctcgagtcaacattcatcatcgcgag |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528278 |
atgggg-tttttcttccaaaaccactgacgtaaccgccagagttctgaaataacaatggacaaacattcatcttctcgagtcaacattcatcatcgcgag |
32528376 |
T |
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| Q |
411 |
aaaacctaaaagtagtgatggccttgcacatccctatt |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32528377 |
aaaacctaaaagtagtgatggccttgcacatccctatt |
32528414 |
T |
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