View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_11 (Length: 312)
Name: NF15422_low_11
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_11 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9071048 - 9070737
Alignment:
| Q |
1 |
agaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccaga |
100 |
Q |
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| T |
9071048 |
agaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccaga |
9070949 |
T |
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| Q |
101 |
caattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgc |
200 |
Q |
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| T |
9070948 |
caattgccttccaaaaaagtttttgatactcaacaattcatcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgc |
9070849 |
T |
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| Q |
201 |
tcttcagttaggaaacgacacttgacaaaccaatatcagacatccaaagagacacaagatatcatcacttgtccactttatgttgctaattcggacgaag |
300 |
Q |
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| T |
9070848 |
ttttcagttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaag |
9070749 |
T |
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| Q |
301 |
atatcgttgatt |
312 |
Q |
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| T |
9070748 |
atatcgttgatt |
9070737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 8862907 - 8862628
Alignment:
| Q |
4 |
aaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaa |
103 |
Q |
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| T |
8862907 |
aaaccatgatggtcctctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaatcaaaccgaatttcagtgatggacccggacaa |
8862808 |
T |
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| Q |
104 |
ttgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatat--caaaatgttctt-cttcaactgc |
200 |
Q |
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| T |
8862807 |
ttgcattcctaaaaagtttctgaaacttaacaactcatcatttctaccttaccgattttttccacaaccaggaacgacaaaattgtctttcttcaattgc |
8862708 |
T |
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| Q |
201 |
tcttcagttaggaaacgacacttgacaaaccaatatcagacatccaaagagacacaagatatcatcacttgtccacttta |
280 |
Q |
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| T |
8862707 |
tcttcagttaggaaacaacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtccagttta |
8862628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 9087154 - 9087066
Alignment:
| Q |
192 |
ttcaactgctcttcagttaggaaacgacacttgacaaaccaatatcagacatccaaagagacacaagatatcatcacttgtccacttta |
280 |
Q |
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| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaattta |
9087066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 9109116 - 9108985
Alignment:
| Q |
97 |
cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa |
196 |
Q |
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| T |
9109116 |
cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa |
9109018 |
T |
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| Q |
197 |
ctgctcttcagttaggaaacgacacttgacaaa |
229 |
Q |
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| T |
9109017 |
ctgctcttcagttaagaaacggcacttgtcaaa |
9108985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 9126305 - 9126262
Alignment:
| Q |
187 |
tcttcttcaactgctcttcagttaggaaacgacacttgacaaac |
230 |
Q |
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| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaac |
9126262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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