View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_12 (Length: 308)
Name: NF15422_low_12
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 14122206 - 14121916
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgatgcagttatcgttgtgtggcgagaaccgtggcagtgaatgc |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |
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| T |
14122206 |
ttgaatgttgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgatgcagttatcgttgtgcggcgagaatcgtggcggtgaatgc |
14122107 |
T |
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| Q |
118 |
aatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatt |
217 |
Q |
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|| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14122106 |
aacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatt |
14122007 |
T |
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| Q |
218 |
tggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataagaataaaaaatgaaataagagagtgtgcgtg |
308 |
Q |
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| T |
14122006 |
tggcgctgcaaacatgggagtgatttcagttgctttttttattttatacaaaataaataataataaaaaataaaataagagagtgtgcgtg |
14121916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 20008163 - 20008454
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgatgcagttatcgttgtgtggcgagaaccgtggcagtgaatgc |
117 |
Q |
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| T |
20008163 |
ttgaatgttgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgatgcagttatcgttgtgcggcgagaatcgtggcggtgaatgc |
20008262 |
T |
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| Q |
118 |
aatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatt |
217 |
Q |
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| T |
20008263 |
aacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatt |
20008362 |
T |
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| Q |
218 |
tggcgctgcaaacgtcagagtga-tttcagttgcnnnnnnnattttatgcaaaataaataagaataaaaaatgaaataagagagtgtgcgtg |
308 |
Q |
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| T |
20008363 |
tggcgctgcaaacatgggagtgattttcagttgctttttttattttatacaaaataaataagaataaaaaataaaataagagagtgtgcgtg |
20008454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 49622301 - 49622064
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga-----tgcagttatcgttgtgtggcgagaaccgtggcagtg |
112 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||||||| ||| |
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| T |
49622301 |
ttgaatgttgaaacaggggaatcaaagtaaagtgatgtttgaggatggagatgcagcgacgatatgtagttatagttgtgcggcgagaaccgtggcggtg |
49622202 |
T |
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| Q |
113 |
aatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaatt |
212 |
Q |
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||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| || ||||| |
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| T |
49622201 |
aatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggtctgtagaattggtggtgagatcaatcaattagtggcggtgaaatt |
49622102 |
T |
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| Q |
213 |
gcatttggcgctgcaaacgtcagagtgatttcagttgc |
250 |
Q |
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| T |
49622101 |
gcatttggcgctgtaaacgtgggagtgatttgagttgc |
49622064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 53325638 - 53325923
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga-----tgcagttatcgttgtgtggcgagaaccgtggcagtg |
112 |
Q |
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||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
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| T |
53325638 |
ttgaatgttgaaacaggggaatcagagtaaagtgatgtttgaggatggagatgcagcgacgatatgcagttatagttgtgtggcgagaaccgtggaggtg |
53325737 |
T |
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| Q |
113 |
aatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaatt |
212 |
Q |
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||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
53325738 |
aatacaacagcggcgatggtagagcagacaacaatggcgacgaaacgacaaaggcttgtagaattggtggtgagatcaaccaattagtggcggttaaatt |
53325837 |
T |
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| Q |
213 |
gcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataagaataaaaaatgaaataagag |
298 |
Q |
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| T |
53325838 |
gcatttggcgctgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaatgagaatataaagtaaaataagag |
53325923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 35048546 - 35048309
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcga-----tgcagttatcgttgtgtggcgagaaccgtggcagtg |
112 |
Q |
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||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||||||| ||| |
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| T |
35048546 |
ttgaatgttgaaacagaggaatcaaagtaaagtgatgtttgaggatggagatgcagcgacgatatgtagttatagttgtgcggcgagaaccgtggcggtg |
35048447 |
T |
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| Q |
113 |
aatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtggtgagatcaaccaattagtggcagttaaatt |
212 |
Q |
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||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| || ||||| |
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| T |
35048446 |
aatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgagaaaggtctgtagaattggtggtgagatcaatcaattagtggcggtgaaatt |
35048347 |
T |
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| Q |
213 |
gcatttggcgctgcaaacgtcagagtgatttcagttgc |
250 |
Q |
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||||||||||||| ||| || ||||||||| |||||| |
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| T |
35048346 |
gcatttggcgctgtaaatgtgggagtgatttgagttgc |
35048309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 76 - 308
Target Start/End: Original strand, 15636359 - 15636593
Alignment:
| Q |
76 |
atgcagttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagac |
175 |
Q |
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|||||||||| |||||| | ||||||||||||| |||||| ||| || |||||||||||| |||||||||||||||||||| ||||||||||||| || |
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| T |
15636359 |
atgcagttatagttgtgcgacgagaaccgtggcggtgaatacaacagtggcgatggtagagaagacaacaacggcgacgaaaagacaaaggcttgtggaa |
15636458 |
T |
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| Q |
176 |
ttggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaat |
275 |
Q |
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| T |
15636459 |
tttgtggtgagatcaaccaattggtggcggttaaattgtatttggcggtgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaat |
15636558 |
T |
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| Q |
276 |
aagaataaaaaatgaa--ataagagagtgtgcgtg |
308 |
Q |
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||||||||||||| || ||||||||||||||||| |
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| T |
15636559 |
aagaataaaaaataaaatataagagagtgtgcgtg |
15636593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 35056177 - 35056295
Alignment:
| Q |
18 |
ttgaatgctgaaacaggggaatcaaagtaaggtgatgtttgaggagggagatgcagcgat-----gcagttatcgttgtgtggcgagaaccgtggcagtg |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||| |||||| ||||||||||||||| ||| |
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| T |
35056177 |
ttgaatgctgaaacaggggaatcaaagtaaagtgatgtttgaggatggaattgcagcgatgataagcagttatagttgtgcggcgagaaccgtggcggtg |
35056276 |
T |
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| Q |
113 |
aatgcaatagcggcgatgg |
131 |
Q |
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|||| || ||||||||||| |
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| T |
35056277 |
aatgtaacagcggcgatgg |
35056295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 35056389 - 35056449
Alignment:
| Q |
165 |
ggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctg |
225 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| | |||| |||||| ||||||| |
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| T |
35056389 |
ggcttgtagaattggtggtgagattaaccaattagtggcggctaaagtgcattcggcgctg |
35056449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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