View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_16 (Length: 215)
Name: NF15422_low_16
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 20008525 - 20008431
Alignment:
| Q |
121 |
aagagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttatttcattt |
215 |
Q |
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| T |
20008525 |
aagagcattgctatttcacacgacatttaaaacgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttattttattt |
20008431 |
T |
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Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 14121845 - 14121939
Alignment:
| Q |
121 |
aagagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttatttcattt |
215 |
Q |
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| T |
14121845 |
aagagcattgctatttcacacgacatttaaaacgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttattttattt |
14121939 |
T |
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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 37321657 - 37321725
Alignment:
| Q |
54 |
ttaaggaaaatgttaacgagtattttaaggacgctcttcaagagtttaaagcagtaagtttttatgaaa |
122 |
Q |
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| T |
37321657 |
ttaaggaaaatgttaacgggtatcttaaggacactcttcaagagtttaaagcagtaagtttttatgaaa |
37321725 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 53326002 - 53325920
Alignment:
| Q |
122 |
agagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtgga-aaagtcacgcacactct |
203 |
Q |
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| T |
53326002 |
agagtattgttatttcacacgacatttcaaacgcacgacaatgcacgactcacgtgcttagtgtacaaagtcacgcacactct |
53325920 |
T |
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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 37321507 - 37321550
Alignment:
| Q |
13 |
gaaaagaatgcatcttgatatagatagtgctaattattgtttta |
56 |
Q |
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| T |
37321507 |
gaaaagaatacaccttgttatagatagtgctaattattgtttta |
37321550 |
T |
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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 5481988 - 5481928
Alignment:
| Q |
127 |
attgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaa |
189 |
Q |
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| T |
5481988 |
attgctatttcacac-acatttcaac-gcacgacaatacacgactcacgtgcttagtgtaaaa |
5481928 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 15636642 - 15636577
Alignment:
| Q |
145 |
atttaaaatgcacgacaatacacgactcacgtgctcagtg--gaaaagtcacgcacactctcttat |
208 |
Q |
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| T |
15636642 |
atttcaaacgcacgacaatgcacgactcacgtgcttagtgtaaaaaagtcacgcacactctcttat |
15636577 |
T |
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