View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_2 (Length: 645)
Name: NF15422_low_2
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 41 - 636
Target Start/End: Complemental strand, 52846592 - 52845995
Alignment:
| Q |
41 |
catccatatttcaactctaccaagtcaannnnnnnnnn-atggcatggtatgcattaccttattaccattttaacatatatactaagtgaatttgatttt |
139 |
Q |
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| T |
52846592 |
catccatatttcaactctaccaagtcaacatttttttttatggcatggtatgcattaccttattaccattttaacatatatactaagtgaatttgatttt |
52846493 |
T |
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| Q |
140 |
ggttgtaaaagttagagtatggatatctctttggacatactataatagggggaaaataattttaaaacttataattttttaacattatttgaaatttaag |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52846492 |
ggttgtaaaagttagagtatggatatctctttggacatactataatagggggaaaataattttaaaacttataattttttaacattatttgagatttaag |
52846393 |
T |
|
| Q |
240 |
aaactaaagtgtgattgttcacaaggaataagaacattttaagaaaacagaaaatagacaacttccttctgttccattgttcctaagcttcgtaccgagg |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52846392 |
aaactaaagtgtgattgttcacaaggaataagaacattttaagaaaacagaaaatagacaacttcctcctgttccattgttcctaagcttcgtaccgagg |
52846293 |
T |
|
| Q |
340 |
aaattagaagaaaataaataaatggcatacaatgcaatgggttttattatattttagaagcaaactcaaccttgtttggatatgaaacttactaaccgta |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52846292 |
aaattagaagaaaataaataaatggcatacaatgcaatgggttttattatattttagaagcaaactcaaccttgtttggatatgaaacttactaaccgta |
52846193 |
T |
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| Q |
440 |
tagttcttcactagtttgaaggaaaaattagcatcatattgaataaagtctgattattttcatttgaagcagttagttaataa-nnnnnnnatcaaattc |
538 |
Q |
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| T |
52846192 |
tagttcttcactagtttgaaggaaaaattagcatcatattgaataaagtctgattattttcatttgaagcagttagttaataattttttttatcaaattc |
52846093 |
T |
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| Q |
539 |
atatatgcaatannnnnnnaagtgaaccaaaattataagattgtttaaagtattgccataatatttaatgcaatgtagatattactgtatagtataat |
636 |
Q |
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| T |
52846092 |
atatatgcaatattttttttagtgaaccaaaattataagattgtttaaagtattgccataatatttaatgcaatgtagatattactgtatagtataat |
52845995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6251688 - 6251642
Alignment:
| Q |
1 |
aaactaaatcgtgaataatcattaattattgtaattagttcatccat |
47 |
Q |
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| T |
6251688 |
aaactaaatcgtgaataatcattcattattgtaattagttcatccat |
6251642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6262556 - 6262507
Alignment:
| Q |
1 |
aaactaaatcgtgaataatcattaattattgtaattagttcatccatatt |
50 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
6262556 |
aaactaaatcttgaataatcatccattattgtaattagttcatccctatt |
6262507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6246477 - 6246435
Alignment:
| Q |
1 |
aaactaaatcgtgaataatcattaattattgtaattagttcat |
43 |
Q |
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|||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
6246477 |
aaactaaatcttgaataatcatcaaatattgtaattagttcat |
6246435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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