View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_6 (Length: 462)
Name: NF15422_low_6
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 21683824 - 21684241
Alignment:
| Q |
1 |
tcctctagtcttggtaagtaatgtcaaatttcaaatcatcaatcctcacgacgtcttatactagttataaacccgtgcaattcaccgatgacatttgaca |
100 |
Q |
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| T |
21683824 |
tcctctagtcttggtaagtaatgtcaaatttcaaatcatcaatcctcacgacgtcttatactagttataaacccgtgcaattcaccggtgacatttgaca |
21683923 |
T |
|
| Q |
101 |
gaatatgactgtatggctcacattgtcacttttaaattttcagactttcatcatcatgtcatgtgtgatagctgtttctgtgaactttagcacttttcta |
200 |
Q |
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| T |
21683924 |
gaatatgactgtatgactcacattgtcacttttaaattttcagactttcatcatcatgtcatgtgtgatagctgtttctgtgaactttagcacttttcta |
21684023 |
T |
|
| Q |
201 |
gtaataggaaaaacatctccagtaacatatcaagtgttgggccacctcaagacttgtcttgttctaggatttggctacacattgctccatgatcctttca |
300 |
Q |
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| T |
21684024 |
gtaataggaaaaacatctccagtaacgtatcaagtgttgggccacctcaagacttgtcttgttctaggatttggctacacattgctccatgatcctttca |
21684123 |
T |
|
| Q |
301 |
cagaaaggaacattattggaatactagtagcagtttttggaatgggtttgtattcctatttctgcactcaggaaaacaaaaagaaactcgtagtcgatcc |
400 |
Q |
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| T |
21684124 |
ctgaaaggaacattattggaatactagtagcagtgtttggaatgggtttgtattcctatttctgcactcaggaaaacaaaaagaaactcgtagtcgatcc |
21684223 |
T |
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| Q |
401 |
tcctttgtcgtctcaggt |
418 |
Q |
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| T |
21684224 |
tcctttgtcgtctcaggt |
21684241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 147 - 365
Target Start/End: Complemental strand, 40411607 - 40411389
Alignment:
| Q |
147 |
ttcatcatcatgtcatgtgtgatagctgtttctgtgaactttagcacttttctagtaataggaaaaacatctccagtaacatatcaagtgttgggccacc |
246 |
Q |
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||||||||| | ||||| |||| ||||||||||||||||| ||||| |||||||| || || |||||||| || ||||| |||||||| | ||||||| |
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| T |
40411607 |
ttcatcatcctatcatgcttgattgctgtttctgtgaacttcagcacgtttctagttattggcaaaacatcacctgtaacttatcaagtactaggccacc |
40411508 |
T |
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| Q |
247 |
tcaagacttgtcttgttctaggatttggctacacattgctccatgatcctttcacagaaaggaacattattggaatactagtagcagtttttggaatggg |
346 |
Q |
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|||| || || |||||| |||| ||||||||||||||||||||||| || |||| | ||||||||||||||||||| | | || |||||||||||| |
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| T |
40411507 |
tcaaaacatgccttgttataggctttggctacacattgctccatgaccccttcaatggaaggaacattattggaatattgattgctatttttggaatggt |
40411408 |
T |
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| Q |
347 |
tttgtattcctatttctgc |
365 |
Q |
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|||||| || ||||||||| |
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| T |
40411407 |
tttgtactcttatttctgc |
40411389 |
T |
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