View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_7 (Length: 358)
Name: NF15422_low_7
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 14122468 - 14122251
Alignment:
| Q |
1 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14122468 |
atcccaatcctagattcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacctcctcttggacagaagaag |
14122369 |
T |
|
| Q |
101 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
14122368 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaactaatcaactaaattaacaagtggatataacatgatttctatatatctaa |
14122269 |
T |
|
| Q |
201 |
ctatataaaatagaagac |
218 |
Q |
| |
|
||| |||||||||||||| |
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| T |
14122268 |
ctaaataaaatagaagac |
14122251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20007900 - 20008117
Alignment:
| Q |
1 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
100 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20007900 |
atcccaatcctagattcttcatttgcttgaacaatatttgcttctaaattttaatcactattttcatttaggtgatcaacctcctcttggacagaagaag |
20007999 |
T |
|
| Q |
101 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatctaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
20008000 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaactaatcaactaaattaacaagtggatataacatgatttctatatatctaa |
20008099 |
T |
|
| Q |
201 |
ctatataaaatagaagac |
218 |
Q |
| |
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||| |||||||||||||| |
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| T |
20008100 |
ctaaataaaatagaagac |
20008117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 49622549 - 49622347
Alignment:
| Q |
1 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
49622549 |
atcccaatcctaggttcatcatctgattgaacaatatttgcttctaaattttcatcattgttttcatttatgtgatcaacctcctcttggacagaaaaag |
49622450 |
T |
|
| Q |
101 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatctaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
49622449 |
tagatcccgtttccactaatgcagcaaattttacgaaacacaaacttaaattaatcaactaaattaacaagtggatataacatgatttctaaatatctaa |
49622350 |
T |
|
| Q |
201 |
cta |
203 |
Q |
| |
|
||| |
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|
| T |
49622349 |
cta |
49622347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 53325390 - 53325600
Alignment:
| Q |
1 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53325390 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
53325489 |
T |
|
| Q |
101 |
tagatcccgtctccact-aatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatcta |
199 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
53325490 |
tagatcccgtctccactaaatacagaaaattttacaaaacacaaacttaaattaatcaactaaattaacaagtggatataacatgatttctatatatcta |
53325589 |
T |
|
| Q |
200 |
actatataaaa |
210 |
Q |
| |
|
|||| |||||| |
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|
| T |
53325590 |
actagataaaa |
53325600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 35048794 - 35048592
Alignment:
| Q |
1 |
atcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35048794 |
atcccaatcctaggttcctcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacctcctcttggacagaagaag |
35048695 |
T |
|
| Q |
101 |
tagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatctaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
35048694 |
tagatcccgtttccactaatgcagcaaattttacaaaacacaaacttaaatcaatcaactaaattaacaagtggatataacatgatttctaaatatctaa |
35048595 |
T |
|
| Q |
201 |
cta |
203 |
Q |
| |
|
||| |
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|
| T |
35048594 |
cta |
35048592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 15636115 - 15636293
Alignment:
| Q |
24 |
tgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaagtagatcccgtctccactaa-tgc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15636115 |
tgcttgaacaatatttgcttctaaattttcatcactattttcattta---------cctcctcttggacagaagaagtagatcccgtctccactaaatgc |
15636205 |
T |
|
| Q |
123 |
agaaaattttacaaaacacaaacttaaattaatcaactaaattcacaagtagatataacatgatttctatatatctaactatataaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
15636206 |
agaaaattttacaaaacacaaacttaaatcaatcaactaaattaacaagtggatataacatgatttctatatatctaactagataaaa |
15636293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 1177929 - 1177850
Alignment:
| Q |
26 |
cttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctcttggacagaagaagtagat |
105 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| | || ||||||||||||||| | |||||||| ||||||||||||| |
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|
| T |
1177929 |
cttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgatctcctcttaattagaagaagtagat |
1177850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 7494960 - 7494890
Alignment:
| Q |
18 |
ttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgtgatcaacctcctctt |
88 |
Q |
| |
|
||||||| | |||||||||||| |||| ||||| ||||| | ||| ||||||||||||||| |||||||| |
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|
| T |
7494960 |
ttcatcttcatgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctctt |
7494890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 9284943 - 9284983
Alignment:
| Q |
33 |
aatatttgcttctaaattttcatcactattttcatttatgt |
73 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
9284943 |
aatatttgcttttaaattttaatcacaattttcatttatgt |
9284983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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