View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_low_8 (Length: 357)
Name: NF15422_low_8
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 2525450 - 2525713
Alignment:
| Q |
18 |
aatggagcaagaatcaagacatttcctgtgagtaattactactatagtttgtgttgggaaattactaacatatgatcacatttgctaactataattctac |
117 |
Q |
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| T |
2525450 |
aatggagcaagaatcaagacatttcctgtgagtaattactactatagtttgtggtgggaaattac-aacatatgatcacatttgctaactataattctac |
2525548 |
T |
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| Q |
118 |
ttcactttttctttagcagatgtaagtagaaattagtaaattataactatgtaaataattatatattactatttttctaatagagataatatcatatatg |
217 |
Q |
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| T |
2525549 |
ttcaccttttctttagcaaatgtaagtagaaattagtaaattataactatgtaaataattatatattactatttttctaatagagataatatcatatatg |
2525648 |
T |
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| Q |
218 |
aaagcaaaatagaaggggcactttcactgcacacataaaaagtatcgtcaactaaatatattcaa |
282 |
Q |
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| T |
2525649 |
aaagcaaaatagaaggggcactttcactgcacacataaaaagtatcgtcaattaaatatattcaa |
2525713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 2525735 - 2525789
Alignment:
| Q |
303 |
cttatatttaagaccgaagtatacaagtattcaaagatttttctcataagctact |
357 |
Q |
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| T |
2525735 |
cttatatttaagaccgaagtatacaaatattcaaagatttttcttataaactact |
2525789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 11658216 - 11658182
Alignment:
| Q |
18 |
aatggagcaagaatcaagacatttcctgtgagtaa |
52 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
11658216 |
aatggagctagaatcaagacatttcctgtgagtaa |
11658182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 32925764 - 32925798
Alignment:
| Q |
18 |
aatggagcaagaatcaagacatttcctgtgagtaa |
52 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
32925764 |
aatggagcaagaatcaaaacatttcctgtgagtaa |
32925798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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