View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_high_13 (Length: 591)
Name: NF15423_high_13
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 5 - 573
Target Start/End: Original strand, 55177688 - 55178256
Alignment:
| Q |
5 |
atcttgtcactaacctttccatacatgaagtattcaggtgcaagataaccaaaagttccaactacatcgtcttgtatcacaaaagatgaagttgttggtc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55177688 |
atcttgtcactaacctttccatacatgaagtattcaggtgcaagataaccaaaagttccaactacatcgtcttgtatcacaaaagatgaagttgttggtc |
55177787 |
T |
|
| Q |
105 |
cccacatggcaagtccaaaatcagataactgtatttcgcacgcatgaagaaaataataacgaatgtgtacatgtcacatgacaatcaaaaatttcaaaca |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55177788 |
cccacatcgcaagtccaaaatcagataactgtatttcgcacgcatgaagaaaataataacgaatgtgtacatgtcacatcacaatcaaaaatttcaaaca |
55177887 |
T |
|
| Q |
205 |
taaaatgatattaattatcaattctagttaatagtatcaaagttatgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55177888 |
taaaatgatattaattatcaattctagttaatagtatcaaagttatgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtc |
55177987 |
T |
|
| Q |
305 |
tctatgtataataggcttggaggtttggttgtgcttgtgcaggtaattcagtgcttcaccaatcccaacagctaccttaaatctgttttcccatgtcaac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55177988 |
tctatgtataataggcttggaggtttggttgtgcttgtgcaggtaattcagtgcttcaccaatcccaacagctaccttaaatctgtcttcccatgtcaac |
55178087 |
T |
|
| Q |
405 |
atagattcatccttgttcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctagtgtatatatactaattctattt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178088 |
atagattcatccttgttcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctagtgtatatatactaattctattt |
55178187 |
T |
|
| Q |
505 |
ttaattaattacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178188 |
ttaattaattacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagt |
55178256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 27669953 - 27670083
Alignment:
| Q |
5 |
atcttgtcactaacctttccatacatgaagtattcaggtgcaagataaccaaaagttccaactacatcgtcttgtatcacaaaagatgaagttgttggtc |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| ||| ||| |||| |||||||||| |
|
|
| T |
27669953 |
atcttgtcactaacttttccatacatgaagtattcaggagcaagataaccaaatgttccgactacatcttcttgtgtcaaaaaggatgttgttgttggtc |
27670052 |
T |
|
| Q |
105 |
cccacatggcaagtccaaaatcagataactg |
135 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| |
|
|
| T |
27670053 |
cccatattgcaagtccaaaatcagacaactg |
27670083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 27670513 - 27670576
Alignment:
| Q |
250 |
tgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtctctatgtat |
313 |
Q |
| |
|
||||||| |||||||||| | | | |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
27670513 |
tgattacttgtggctcaagctccttggaaagaagaatgtttgaagacttgacatctctatgtat |
27670576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University