View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_15 (Length: 544)
Name: NF15423_high_15
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Complemental strand, 15261202 - 15260676
Alignment:
| Q |
2 |
gagatgaactagtggcatggtgaagctgagtttgagattttgtaagagacaaagggtaaaagtataaataaagaagaacaatgggtaagagagctatgag |
101 |
Q |
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| T |
15261202 |
gagaagaactagtggcatggtgaagctgagtttgagattttgtaagagacaaagggtaaaagtataaataaagaagaacaatgggtaagagagctatgag |
15261103 |
T |
|
| Q |
102 |
aagtagaagatgaagtgtatatggaagaagggtcttagagagtgaaattgaatcatctttcattgtacttttcattttgaaagcannnnnnngtgcttcc |
201 |
Q |
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| T |
15261102 |
aagtagaagatgaagtgtatatggaagaagggtcttagagagtgaaattgaatcatctttcattgtacttttcattttgaaagcatttttttgtgcttcc |
15261003 |
T |
|
| Q |
202 |
tttcctactttgttttctgttcatagtctcacttttgtgatgttctaagaatagaatagattctctttccaaaatattggcgtgaagtaaacgtagttca |
301 |
Q |
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| T |
15261002 |
tttcctactttgttttctgctcatagtctctcttttgtgatgttctaa-aatagaatagattttctttccaaaatattggcgtgaagtaaacgtagttca |
15260904 |
T |
|
| Q |
302 |
aatgtttctaacttagtacgattttcaattaatacacacactcatgtaagttgaaaactatgcacacttatctatattagatgttgacatattaaagtac |
401 |
Q |
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| T |
15260903 |
aatgtttctaacttagtacgattttcaattaatacacacactcatgtaagttgaaaactatgcacacttatctatattagatgttgacatattaaagtac |
15260804 |
T |
|
| Q |
402 |
aatatatggttgatagtaataaatatagaagtgaaataaaatgaaaactagaggtgaagccaaatataaattttcatatcatggtgaagtgagattgaag |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260803 |
aatatatggttgatagtaataaatatagaagtgaaataaaatttaaactagaggtgaagccaaatataaattttcatatcatggtgaagtgagattgaag |
15260704 |
T |
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| Q |
502 |
aaagtgtaacacaaggacctaggtttct |
529 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
15260703 |
aaagtgtgacacaaggacctaggtttct |
15260676 |
T |
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