View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_18 (Length: 511)
Name: NF15423_high_18
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Complemental strand, 43817453 - 43816977
Alignment:
| Q |
15 |
caaaggtttcaggtagaatttacctcgacggttgttttcttcgttatgataactacactttctttgatgagagtgtagatttatcgcgtgatacgaaaat |
114 |
Q |
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| T |
43817453 |
caaaggtttcaggtagaatttacctcgacggttgttttcttcgttatgataactacactttctttgatgagagtgtagatttatcgcgtgatacgaaaat |
43817354 |
T |
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| Q |
115 |
atgtgggtccacggaaaagggagagacggtggatgcgaaacatgttgagacggtgattttgaaagtgaccaagggtgccggggaacataaattttctgtg |
214 |
Q |
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| T |
43817353 |
atgtgggtccacggaaaagggagagacggtggatgcgaaacatgttgagacggtgattttgaaagtgaccaagggtgccggggaacataaattttctgtg |
43817254 |
T |
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| Q |
215 |
gatggggaaggtggtgtgtttgcaatggcgcagtgttgggagacgttggataaattgagctgtcaaaaatgtttgatagcagcggagnnnnnnntgcagg |
314 |
Q |
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| T |
43817253 |
gatggggaaggtggtgcgtttgcaatggcgcagtgttgggagacgttggataaattgagctgtcaaaaatgtttgatagcagcggagaaaaaaatgcagg |
43817154 |
T |
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| Q |
315 |
aatgtgttcctggtaatgagggtagaagcttatttactggttgttttatgaggtattcaacaaggaaattctataacaatgtctatgttcaaaatgatac |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817153 |
aatgtgttcctagtaatgagggtagaagcttatttactggttgttttatgaggtattcaacaaggaaattctataacaatgtctatgttcaaaatgatac |
43817054 |
T |
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| Q |
415 |
atgggttgaaattcctcttcctcgaggtagtatttatcacttaaactctaaattagaagacatattatatacactaa |
491 |
Q |
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| T |
43817053 |
atgggttgaaattcctcttcctcgaggtagtatttatcacttaaactctaaattagaagacttattatatacactaa |
43816977 |
T |
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