View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_high_25 (Length: 453)
Name: NF15423_high_25
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 5573263 - 5572820
Alignment:
| Q |
1 |
atactatagtactccccacttaggctatttgcgggttcaaaaacagcaacagtgcctagtgacaatgcctgcttaaatgaatattattacgccgttaatt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573263 |
atactatagtactccccacttaagctatttgcgggttcaaaaacaccaacagtgcctagtgacaatgcctgcttaaatgaatattattacgccgttaatt |
5573164 |
T |
|
| Q |
101 |
ttaaattaatcaattatgtatgtattgttagatataatatctttttgagctggaaagccatgcctggctgcagtgcagacactgaataaccaattaccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573163 |
ttaaattaatcaattatgtatgtattgttagatataatatctttttgagctggaaagccatgcctggctgcagtgcagacactgaataaccaattaccat |
5573064 |
T |
|
| Q |
201 |
tactgattttttccacgttatgggagtagttgagcaatttgtgctcccctcnnnnnnnnacttttcagttttgtcaaatgaacagaatgttgtctgaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573063 |
tactgattttttccacgttatgggagtagttgagcaatttgtgctcccctcttctttttacttttcagttttgtcaaatgaacagaatgttgtctgaatt |
5572964 |
T |
|
| Q |
301 |
atgcctaattaatcagtgacattgtccacgatgtatacaaaatcatacgtagttatatatcaatagatgttaaattaatttatttagaagacacac---- |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5572963 |
atgcctaattaatcagtgacattgtccacgatgtatacaaaatcatacgtagttatatatcaatagatgttaaattaatttatttagaagacacacacta |
5572864 |
T |
|
| Q |
397 |
----taataatattgtaatttcaatggactcttaacacacctctc |
437 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
5572863 |
ataataataatattgtaatttc-atggattcttaacacacctctc |
5572820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University