View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_32 (Length: 373)

Name: NF15423_high_32
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_32
NF15423_high_32
[»] chr4 (3 HSPs)
chr4 (161-240)||(32920801-32920880)
chr4 (1-74)||(32920633-32920706)
chr4 (312-358)||(32920952-32920998)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 32920801 - 32920880
Alignment:
Q  161 gaatttttatgaataccctcaaagaagaacgaaatgttttcagcgctctcgaagaaataatcatcagtcaactgttgctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32920801 gaatttttatgaataccctcaaagaagaacgaaatgttttcagcgctctcgaagaaataatcatcagtcaactgttgctg 32920880  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32920633 - 32920706
Alignment:
Q  1 tggccaactttgttgagggataattgctttggctgctttaagttaccatcatcaccaaaagctttctctaaccc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32920633 tggccaactttgttgagggataattgctttggctgctttaagttaccatcatcaccaaaagctttctctaaccc 32920706  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 32920952 - 32920998
Alignment:
Q  312 taactaacttggtttttggtggagaaaatagaggcggtggaagaagg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32920952 taactaacttggtttttggtggagaaaatagaggcggtggaagaagg 32920998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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