View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_33 (Length: 368)
Name: NF15423_high_33
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 8555380 - 8555042
Alignment:
| Q |
13 |
gaagaaatgaaatctagcacattacttttgacagctctactcagtccaatgagcctctaacatcttagccataaaagcgtacgtgtcaacggcttcatca |
112 |
Q |
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| T |
8555380 |
gaagaaatgaaatctcgcacattacttttgacagctctactcaatccaatgagcctctaacatcttagccataaaagtgtacgtgtcagcggcttcatca |
8555281 |
T |
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| Q |
113 |
atctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaagcgaacaagaaaacaaattagtagtatattacaattatctgtgt |
212 |
Q |
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| T |
8555280 |
atctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaagctaacaagaaaacaaattagtagtatattacaattttctgtgt |
8555181 |
T |
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| Q |
213 |
cggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagtaacaaggacatactgcatg |
312 |
Q |
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| T |
8555180 |
cggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggttcgtctgcggacttttatctaggctagtaacaaggacatactgcatg |
8555081 |
T |
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| Q |
313 |
gtctggtctgctcaatatttggatttggaatacaagtta |
351 |
Q |
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| T |
8555080 |
gtctggtctgctcaatatttggatttggaatacaagtta |
8555042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 8559739 - 8559616
Alignment:
| Q |
194 |
atattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagt |
293 |
Q |
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| T |
8559739 |
atattacagttttctgtgtcggacgcccagctccatgtccagccttgcattcaattcgagcaattattgggttcgtctggggacttttatccaggctagt |
8559640 |
T |
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| Q |
294 |
aacaaggacatactgcatggtctg |
317 |
Q |
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| T |
8559639 |
aacaaggacatactgcaaggtctg |
8559616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 8559880 - 8559800
Alignment:
| Q |
50 |
tactcagtccaatgagcctctaacatcttagccataaaagcgtacgtgtcaacggcttcatcaatctgcagtcaacaactt |
130 |
Q |
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| T |
8559880 |
tactcaatccaacgagcctctaacatcttagccataaaaccataccggtcagcggcttcatcaatctgcagtcaacaactt |
8559800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 53740787 - 53740703
Alignment:
| Q |
197 |
ttacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggactttt |
281 |
Q |
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| T |
53740787 |
ttaccattttctttgttggacgacccgctccatgtccagctttgcagtcaatgcgaccaattatagggtttgtttggggactttt |
53740703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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