View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_36 (Length: 358)

Name: NF15423_high_36
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_36
NF15423_high_36
[»] chr3 (40 HSPs)
chr3 (10-300)||(54468851-54469141)
chr3 (73-340)||(54468577-54468841)
chr3 (22-199)||(54469111-54469285)
chr3 (19-266)||(54468963-54469210)
chr3 (19-292)||(11227942-11228212)
chr3 (20-292)||(11228098-11228367)
chr3 (20-291)||(54468782-54469050)
chr3 (19-292)||(11228020-11228290)
chr3 (19-292)||(11228332-11228602)
chr3 (101-272)||(11240571-11240742)
chr3 (19-292)||(11228254-11228524)
chr3 (19-272)||(11228430-11228680)
chr3 (101-272)||(11240883-11241054)
chr3 (20-298)||(11241013-11241288)
chr3 (73-272)||(54459182-54459378)
chr3 (103-272)||(54469116-54469285)
chr3 (19-173)||(11227905-11228056)
chr3 (101-292)||(11228488-11228679)
chr3 (101-292)||(11240707-11240898)
chr3 (19-173)||(11241216-11241367)
chr3 (73-199)||(54459477-54459600)
chr3 (144-272)||(54459482-54459610)
chr3 (101-173)||(54459125-54459197)
chr3 (19-200)||(54459176-54459354)
chr3 (101-188)||(11241279-11241366)
chr3 (73-201)||(11240486-11240611)
chr3 (134-272)||(11240805-11240943)
chr3 (101-166)||(49745127-49745192)
chr3 (20-92)||(54459125-54459197)
chr3 (140-272)||(54459338-54459470)
chr3 (73-198)||(54459793-54459915)
chr3 (153-292)||(54459855-54459994)
chr3 (144-292)||(54459540-54459688)
chr3 (19-272)||(11240493-11240743)
chr3 (231-285)||(54469181-54469235)
chr3 (144-197)||(11241426-11241479)
chr3 (19-92)||(54459818-54459891)
chr3 (146-198)||(11241581-11241633)
chr3 (20-48)||(49745127-49745155)
chr3 (20-118)||(54459480-54459575)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 54469141 - 54468851
Alignment:
Q  10 agaagcatagggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggt 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54469141 agaaacattgggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggt 54469042  T
Q  110 tcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttct 209  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54469041 tcaaaatccgtattggctcctttattttccttaacatcaataccattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttct 54468942  T
Q  210 tctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttctttctcttagc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||||| |||||||    
T  54468941 tctttcccttaacttctacaccattgtctccatatgctgaaacattgtatcttggttcaaaatcttcagtgattcccttctttttcttagc 54468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 340
Target Start/End: Complemental strand, 54468841 - 54468577
Alignment:
Q  73 attgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaa 172  Q
    |||||||||||| ||||||||   ||| |||||||||||||||||   | |  |||| || || |||||| ||||||| |||||  ||||||||||||||    
T  54468841 attgtctccataagctgaaac---attgggtcttggttcaaaatcatcaataactcccttcttatccttagcatcaatttcatttgctccataagctgaa 54468745  T
Q  173 acatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    ||||| ||||||||||  || ||||| |||||| |||||||| ||| | | |  |   |||| ||| |||||  ||||||||| ||||||||||||||||    
T  54468744 acattaggtcttggttcaaagtctttgacgactctcttcttttcctcagcattaatgtcattatcttcatattttgaaacatttggtcttggttcaaaat 54468645  T
Q  273 tttcagtgactcccttctttctcttagcacggatgatgtcattttctatggtgacttgtgtgtctatt 340  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54468644 ttttagtgactcccttctttctcttagcacggatgatgtcattttctatggtgacttgtgtgtctatt 54468577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 54469285 - 54469111
Alignment:
Q  22 tcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgta 121  Q
    ||||||||||||| |||||||| || ||||||||||||||||||| |||| ||||| |||||||| ||||||||   | |||||||||||||||||| ||    
T  54469285 tcttggttcaaaagctttattgacttctttattttctgtaacatcgatatcattgtttccatatgttgaaacgt---tgggtcttggttcaaaatcttta 54469189  T
Q  122 ttggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatcttta 199  Q
     || ||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||  |||||||||    
T  54469188 ctgactcctttattttccttaacatcaatatcactatctccataagcagaaacattgggtcttggttcaaaatcttta 54469111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 54469210 - 54468963
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    |||||||||||||||||||||| || |||||||||||||  |||||||||||| | | |||||||| || |||||   ||| ||||||||||||||||||    
T  54469210 gggtcttggttcaaaatctttactgactcctttattttccttaacatcaatatcactatctccataagcagaaac---attgggtcttggttcaaaatct 54469114  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaac---atttggtcttggtttgaaatctttaacgactttcttctttc 215  Q
     |||||||||||||||||||  |||||||||||| |||||||||||| ||||||||   ||||||||||||||  |||||  ||  | ||   || |||     
T  54469113 ttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatccgtattggctcctttatttt 54469014  T
Q  216 ccttaacttctacaccattgtctccatatgctgaaacattgggtcttggtt 266  Q
    ||||||| || | ||||||||||||||| ||||||||||| ||||||||||    
T  54469013 ccttaacatcaataccattgtctccataagctgaaacatttggtcttggtt 54468963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 11228212 - 11227942
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||| ||||||||||||||||   ||||| || |||||  | ||||| || | |||||||||||| ||||||| ||   ||||||||||||||||||||    
T  11228212 gggtcgtggttcaaaatctttagcagctcccttcttttcattcacatctatgtcattgtctccataagctgaaatgt---ttggtcttggttcaaaatct 11228116  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     || ||||||| || |||||||| |||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| || ||  ||||||| | |    
T  11228115 ttagtggctcccttcttttccttgacatcaatatcattgtctccataagctgaaatgttgggtcttggttcaaaatctttagcggctcccttcttttctt 11228016  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
    |||| || |   ||||||||||||| |||||||  |||||||| |||||||||| || |||| |||| ||||||    
T  11228015 taacatcaatctcattgtctccataagctgaaatgttgggtctaggttcaaaatctttagtgtctccattcttt 11227942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 11228367 - 11228098
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatctg 119  Q
    |||| |||||||||||||||| ||||||| || |||||  |||||||||| | |||||||||||| ||||||| ||   | |||| |||||||||||||     
T  11228367 ggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgt---tgggtcgtggttcaaaatctt 11228271  T
Q  120 tattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccctt 219  Q
    || | ||||| || ||||| |||||||| || ||||||||||||||||||||||  || |||| |||||  ||||||||| |  ||  ||||||| | ||    
T  11228270 tagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagcagctcccttcttttcatt 11228171  T
Q  220 aacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
     || ||||   ||||||||||||| |||||||  || |||||||||||||||| || |||| |||||||||||    
T  11228170 cacatctatgtcattgtctccataagctgaaatgtttggtcttggttcaaaatctttagtggctcccttcttt 11228098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 54469050 - 54468782
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatctg 119  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||  |||||||||||| ||||||||   ||||||||||||||  ||||||     
T  54469050 ggtcttggttcaaaatccgtattggctcctttattttccttaacatcaataccattgtctccataagctgaaac---atttggtcttggtttgaaatctt 54468954  T
Q  120 tattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccctt 219  Q
    ||  | ||   || ||| ||||||| || | | ||||||||||||| |||||||||||   ||||||||  ||||||| |  || |  |||||||  |||    
T  54468953 taacgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgtatcttggttcaaaatcttcagtgattcccttctttttctt 54468854  T
Q  220 aacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttctt 291  Q
    | |||| ||  ||||||||||||| ||||||||||||||||||||||||||||  ||| | |||||||||||    
T  54468853 agcttcaacgtcattgtctccataagctgaaacattgggtcttggttcaaaatcatcaataactcccttctt 54468782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 11228290 - 11228020
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||| |||||||||||||||| | ||||| || |||||  ||||||| || | |||||||||||| ||||||| |   || |||| |||||||||||||    
T  11228290 gggtcgtggttcaaaatctttagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatg---ttgggtcgtggttcaaaatct 11228194  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     ||   ||||| || ||||| || ||||| || ||||||||||||||||||||||  |||||||||||||  |||||||||  | ||  ||||||| |||    
T  11228193 ttagcagctcccttcttttcattcacatctatgtcattgtctccataagctgaaatgtttggtcttggttcaaaatctttagtggctcccttcttttcct 11228094  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
    | || || | | ||||||||||||| |||||||  ||||||||||||||||||| || || | |||||||||||    
T  11228093 tgacatcaatatcattgtctccataagctgaaatgttgggtcttggttcaaaatctttagcggctcccttcttt 11228020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 11228602 - 11228332
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||| |||||||||||||||| ||||||| || |||||  |||||||||| | |||||||||||| ||||||| ||   | |||| |||||||||||||    
T  11228602 gggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgt---tgggtcgtggttcaaaatct 11228506  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     || | ||||| || ||||| |||||||| || ||||||||||||||||||||||  || |||| |||||  ||||||||| |  ||  ||||||| | |    
T  11228505 ttagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagcagctcccttcttttcat 11228406  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
    | || ||||   ||||||||||||| |||||||  || |||| ||||||||||| || |||| |||||||||||    
T  11228405 tcacatctatgtcattgtctccataagctgaaatgtttggtcgtggttcaaaatctttagtggctcccttcttt 11228332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 11240742 - 11240571
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 200  Q
    |||||||||||||||||| || || |||| || ||||  ||||||||||   |||||||| | |||||||||| ||| |||||||||| ||||||||| |    
T  11240742 ggtcttggttcaaaatctttagtgactcccttcttttttttaacatcaacgacattgtcttcgtaagctgaaatattaggtcttggttcgaaatctttga 11240643  T
Q  201 cgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    |||||||||||||| ||||||| ||||   |||||||||||||||||||||  ||||||| ||| |||||||    
T  11240642 cgactttcttcttttccttaacatctatggcattgtctccatatgctgaaatgttgggtcgtggctcaaaat 11240571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 11228524 - 11228254
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||| |||||||||||||||| | ||||| || |||||  ||||||| || | |||||||||||| ||||||| ||   | |||| |||||||||||||    
T  11228524 gggtcgtggttcaaaatctttagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatgt---tgggtcgtggttcaaaatct 11228428  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     ||   ||||| || ||||| || ||||| || ||||||||||||||||||||||  ||||||| |||||  |||||||||  | ||  ||||||| |||    
T  11228427 ttagcagctcccttcttttcattcacatctatgtcattgtctccataagctgaaatgtttggtcgtggttcaaaatctttagtggctcccttcttttcct 11228328  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
    |||| || |   ||||||||||||| |||||||  ||||||| ||||||||||| || |||  |||||||||||    
T  11228327 taacatcaatctcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagtagctcccttcttt 11228254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 11228680 - 11228430
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||||||||||||||  |||| ||||||| || |||||  |||||||||| |  || |||||||| || |||| ||   | |||| |||||||||||||    
T  11228680 gggtcttggttcaaaaattttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgt---tgggtcgtggttcaaaatct 11228584  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     || ||||||| || ||||||||||||||||| ||||||||||||||||||||||  || |||| |||||  |||||||||    ||  ||||||| | |    
T  11228583 ttagtggctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagtagctcccttcttttcat 11228484  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    |||| ||||   ||||||||||||| |||||||  ||||||| |||||||||||    
T  11228483 taacatctatgtcattgtctccataagctgaaatgttgggtcgtggttcaaaat 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 11241054 - 11240883
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 200  Q
    ||||||||||||||||||  | || |||| || |||| ||||||||||||  ||||||||||  ||||||||| | | |||||||||| ||||||||| |    
T  11241054 ggtcttggttcaaaatcttcagtgactcccttctttttcttaacatcaatgacattgtctccgcaagctgaaatactaggtcttggttcgaaatctttga 11240955  T
Q  201 cgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    || ||||||||||| ||||||| ||||   ||| ||||||||| || |||| ||||||||||||||||||||    
T  11240954 cggctttcttcttttccttaacatctatgacatcgtctccataagccgaaatattgggtcttggttcaaaat 11240883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 11241288 - 11241013
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatctg 119  Q
    ||||||||||||||||| ||| |||||||  | |||||  || |||||||   |||||||||||| || |||| ||   | |||| ||||||||||||      
T  11241288 ggtcttggttcaaaatcattagtggctcccctcttttccttagcatcaatggcattgtctccataagccgaaatgt---tgggtcgtggttcaaaatcct 11241192  T
Q  120 tattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccctt 219  Q
    ||  |||| | || ||||| | |||||| || ||||| | ||||||||||||||  |||||||||||||||||| | |||  | ||| ||||||| | ||    
T  11241191 taccggctgccttcttttcatgaacatcgatgtcattctttccataagctgaaatgtttggtcttggtttgaaaccattagtggcttgcttcttttcttt 11241092  T
Q  220 aacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttctttctctta 298  Q
     || || |   |||| |||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  11241091 gacatcaatgtcattttctccataagttgaaatattgggtcttggttcaaaatcttcagtgactcccttctttttctta 11241013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 54459378 - 54459182
Alignment:
Q  73 attgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaa 172  Q
    |||||||||||| ||||||| ||   | |||||||| ||||||||  |  ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  54459378 attgtctccataagctgaaatgt---tgggtcttggctcaaaatcgttggtggctcccttattttccttaacatcaatgtcattgtctccataagctgaa 54459282  T
Q  173 acatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    | ||| ||||||||||  |||||||| ||   |||||||||| | | | | || |   |||| |||||||| ||||||| ||| ||||| ||||||||||    
T  54459281 atattgggtcttggttcaaaatctttgactggtttcttcttttcatcagcatcaatgacattttctccataagctgaaatattaggtctaggttcaaaat 54459182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 272
Target Start/End: Complemental strand, 54469285 - 54469116
Alignment:
Q  103 tcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacg 202  Q
    ||||||||||||| || ||||| || ||||||||||  ||||||| |||||||||| |||||| | |||||| || ||||||||||  |||||||||  |    
T  54469285 tcttggttcaaaagctttattgacttctttattttctgtaacatcgatatcattgtttccatatgttgaaacgttgggtcttggttcaaaatctttactg 54469186  T
Q  203 actttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    |||   || ||| ||||||| || | | || | |||||||| || |||||||||||||||||||||||||    
T  54469185 actcctttattttccttaacatcaatatcactatctccataagcagaaacattgggtcttggttcaaaat 54469116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 11228056 - 11227905
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||||||||||||||||||||  |||||| || |||||| |||||||||| | |||||||||||| ||||||| ||   | ||||| ||||||||||||    
T  11228056 gggtcttggttcaaaatctttagcggctcccttcttttctttaacatcaatctcattgtctccataagctgaaatgt---tgggtctaggttcaaaatct 11227960  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaa 173  Q
     || || |||| || |||||| || ||| ||| ||||| ||||| ||||||||||    
T  11227959 ttagtgtctccattcttttccgtagcattaatgtcattatctccgtaagctgaaa 11227905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 11228679 - 11228488
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 200  Q
    |||||||||||||||  | || ||||||| || ||||||||||||||||| || || ||||||||||| ||||  || |||| |||||  |||||||||     
T  11228679 ggtcttggttcaaaaattttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttag 11228580  T
Q  201 cgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
     | ||  ||||||| ||||||| || |   ||||||||||||| |||||||  ||||||| ||||||||||| || |||  |||||||||||    
T  11228579 tggctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagtagctcccttcttt 11228488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 11240898 - 11240707
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 200  Q
    |||||||||||||||||  ||  |||| | || ||||| |||||||| |||||||| ||||||||||||||||  || |||||||||| |||||| ||||    
T  11240898 ggtcttggttcaaaatccttagcggctgccttcttttcattaacatcgatatcattttctccataagctgaaatgttgggtcttggttcgaaatcattaa 11240799  T
Q  201 cgactttcttctttcccttaacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
     |  || |||||||   || || ||     |||| ||||| || ||||||| |||||||||||||||||||| || ||||||||||||||||    
T  11240798 tggtttgcttcttttgtttgacatcactgtcattttctccgtaagctgaaatattgggtcttggttcaaaatctttagtgactcccttcttt 11240707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 11241367 - 11241216
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    |||||||||||| ||||||||  ||||||| |  ||||   |||||||||| | |||||||||||| ||||||| ||   |||||||||||||||||||     
T  11241367 gggtcttggttcgaaatctttgatggctccctcctttttattaacatcaatgtcattgtctccataagctgaaatgt---ttggtcttggttcaaaatca 11241271  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaa 173  Q
     || |||||||  | ||||||||| |||||||  |||||||||||||||| ||||    
T  11241270 ttagtggctcccctcttttccttagcatcaatggcattgtctccataagccgaaa 11241216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 54459600 - 54459477
Alignment:
Q  73 attgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaa 172  Q
    |||||||||||| |||||||    ||||||||||||||| |||||| || |  |||| || ||||| ||||||||||| |||||||||||| ||||||||    
T  54459600 attgtctccataagctgaaat---atttggtcttggttcgaaatctttagtatctcccttcttttcattaacatcaatgtcattgtctccaaaagctgaa 54459504  T
Q  173 acatttggtcttggtttgaaatcttta 199  Q
    |  || ||||||||||  |||||||||    
T  54459503 atgttgggtcttggttcaaaatcttta 54459477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 54459610 - 54459482
Alignment:
Q  144 catcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctccata 243  Q
    |||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||    ||  ||||||| | ||||| || |   ||||||||||| |    
T  54459610 catcaatggcattgtctccataagctgaaatatttggtcttggttcgaaatctttagtatctcccttcttttcattaacatcaatgtcattgtctccaaa 54459511  T
Q  244 tgctgaaacattgggtcttggttcaaaat 272  Q
     |||||||  |||||||||||||||||||    
T  54459510 agctgaaatgttgggtcttggttcaaaat 54459482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 54459197 - 54459125
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaa 173  Q
    ||||| |||||||||||| || ||||||| || ||||| || |||||||| ||||||||||||||||||||||    
T  54459197 ggtctaggttcaaaatctttaatggctccattcttttcttttacatcaatgtcattgtctccataagctgaaa 54459125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 54459354 - 54459176
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||||||| |||||||| ||  ||||||| ||||||||  |||||||||| | |||||||||||| |||||||    ||| ||||||||||||||||||    
T  54459354 gggtcttggctcaaaatcgttggtggctcccttattttccttaacatcaatgtcattgtctccataagctgaaa---tattgggtcttggttcaaaatct 54459258  T
Q  119 gt-attggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 200  Q
     | | ||| | | || ||||| | | |||||||  |||| |||||||||||||||| ||| ||||| ||||  ||||||||||    
T  54459257 ttgactggtttc-ttcttttcatcagcatcaatgacattttctccataagctgaaatattaggtctaggttcaaaatctttaa 54459176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 11241366 - 11241279
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtt 188  Q
    ||||||||||| |||||| |  ||||||| |  ||||  ||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  11241366 ggtcttggttcgaaatctttgatggctccctcctttttattaacatcaatgtcattgtctccataagctgaaatgtttggtcttggtt 11241279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 11240611 - 11240486
Alignment:
Q  73 attgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaa 172  Q
    |||||||||||||||||||| ||   | |||| ||| ||||||||| ||  ||  ||||| |||||||||   ||||| |||||||||||||||||||||    
T  11240611 attgtctccatatgctgaaatgt---tgggtcgtggctcaaaatctttaacggtacctttcttttccttattttcaatgtcattgtctccataagctgaa 11240515  T
Q  173 acatttggtcttggtttgaaatctttaac 201  Q
    |  || ||||||||||  |||||||||||    
T  11240514 atgttgggtcttggttcaaaatctttaac 11240486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 272
Target Start/End: Complemental strand, 11240943 - 11240805
Alignment:
Q  134 ttttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccat 233  Q
    |||||||||||||| ||  ||| |||||||||||| |||| ||| ||||||||||  ||||| ||| || ||  ||||||| | ||||| || | | |||    
T  11240943 ttttccttaacatctatgacatcgtctccataagccgaaatattgggtcttggttcaaaatccttagcggctgccttcttttcattaacatcgatatcat 11240844  T
Q  234 tgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    | |||||||| |||||||  |||||||||||||| ||||    
T  11240843 tttctccataagctgaaatgttgggtcttggttcgaaat 11240805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 49745127 - 49745192
Alignment:
Q  101 ggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataa 166  Q
    |||||||||||||||||| |||||||||| || ||| ||||  ||||||| |||||||||||||||    
T  49745127 ggtcttggttcaaaatctttattggctcccttgtttgcctttgcatcaatctcattgtctccataa 49745192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 54459197 - 54459125
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaa 92  Q
    ||||| ||||||||||||||| ||||||| || |||||| | |||||||| | |||||||||||| |||||||    
T  54459197 ggtctaggttcaaaatctttaatggctccattcttttcttttacatcaatgtcattgtctccataagctgaaa 54459125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 54459470 - 54459338
Alignment:
Q  140 ttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctc 239  Q
    ||||||||||| ||||| ||||||||||||||||  ||||||||||||| ||||| || |||   ||||||| ||   ||| | || |   |||||||||    
T  54459470 ttaacatcaatgtcattttctccataagctgaaatgtttggtcttggttggaaatattcaactggtttcttcattttattatcatcaatgacattgtctc 54459371  T
Q  240 catatgctgaaacattgggtcttggttcaaaat 272  Q
    |||| |||||||  ||||||||||| |||||||    
T  54459370 cataagctgaaatgttgggtcttggctcaaaat 54459338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 54459915 - 54459793
Alignment:
Q  73 attgtctccatatgctgaaacgtaatttggtcttggttcaaaatctgtattggctcctttattttccttaacatcaatatcattgtctccataagctgaa 172  Q
    |||||||||||| ||||||| ||   | |||||||| ||||||||  |  || |||| || ||||| ||||||||||| |||||||||||||||||||||    
T  54459915 attgtctccataagctgaaatgt---tgggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgtctccataagctgaa 54459819  T
Q  173 acatttggtcttggtttgaaatcttt 198  Q
    |  || | ||||||||  ||||||||    
T  54459818 atgttggttcttggttcaaaatcttt 54459793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 292
Target Start/End: Complemental strand, 54459994 - 54459855
Alignment:
Q  153 cattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctccatatgctgaaac 252  Q
    ||||||||||||||||||||| | |||||||||||| |||||| | |||   ||||||| ||   ||| | || |   ||||||||||||| |||||||     
T  54459994 cattgtctccataagctgaaatagttggtcttggttggaaatcgtcaactggtttcttcattttattagcatcaatgacattgtctccataagctgaaat 54459895  T
Q  253 attgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
     ||||||||||| |||||||  |  |||||||||||||||    
T  54459894 gttgggtcttggctcaaaatcgttggtgactcccttcttt 54459855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 292
Target Start/End: Complemental strand, 54459688 - 54459540
Alignment:
Q  144 catcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgtctccata 243  Q
    |||||||  |||||||||||||||| ||||  |||||| ||||||| ||||||||||    ||||||| || | | | | || |   |||||||||||||    
T  54459688 catcaatgacattgtctccataagccgaaatgtttggttttggtttaaaatctttaattggtttcttcatttcatcatcatcaatggcattgtctccata 54459589  T
Q  244 tgctgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 292  Q
     ||||||| ||| ||||||||||| |||| || |||  |||||||||||    
T  54459588 agctgaaatatttggtcttggttcgaaatctttagtatctcccttcttt 54459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 11240743 - 11240493
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    |||||||||||||||||||||| || |||| || |||| | |||||||||    ||||||| | || |||||||    ||| ||||||||||| ||||||    
T  11240743 gggtcttggttcaaaatctttagtgactcccttcttttttttaacatcaacgacattgtcttcgtaagctgaaat---attaggtcttggttcgaaatct 11240647  T
Q  119 gtattggctcctttattttccttaacatcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttccct 218  Q
     |   | ||   || |||||||||||||| ||  ||||||||||||| |||||||  || |||| ||| |  ||||||||||||      |||||| |||    
T  11240646 ttgacgactttcttcttttccttaacatctatggcattgtctccatatgctgaaatgttgggtcgtggctcaaaatctttaacggtacctttcttttcct 11240547  T
Q  219 taacttctacaccattgtctccatatgctgaaacattgggtcttggttcaaaat 272  Q
    ||  ||| |   ||||||||||||| |||||||  |||||||||||||||||||    
T  11240546 tattttcaatgtcattgtctccataagctgaaatgttgggtcttggttcaaaat 11240493  T

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Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 54469235 - 54469181
Alignment:
Q  231 cattgtctccatatgctgaaacattgggtcttggttcaaaattttcagtgactcc 285  Q
    |||||| |||||||| |||||| ||||||||||||||||||| || | |||||||    
T  54469235 cattgtttccatatgttgaaacgttgggtcttggttcaaaatctttactgactcc 54469181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 11241479 - 11241426
Alignment:
Q  144 catcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatctt 197  Q
    ||||||| ||||||||||| ||||||||||  || |||||||||| ||||||||    
T  11241479 catcaatgtcattgtctccgtaagctgaaatgttgggtcttggttcgaaatctt 11241426  T

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Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 54459891 - 54459818
Alignment:
Q  19 gggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaa 92  Q
    ||||||||| |||||||| ||  || |||| || |||||| |||||||||| | |||||||||||| |||||||    
T  54459891 gggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgtctccataagctgaaa 54459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 11241633 - 11241581
Alignment:
Q  146 tcaatatcattgtctccataagctgaaacatttggtcttggtttgaaatcttt 198  Q
    |||||||||||||  ||||||||||||| |||||| |||||||  ||||||||    
T  11241633 tcaatatcattgttgccataagctgaaatatttggccttggttcaaaatcttt 11241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 49745127 - 49745155
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcc 48  Q
    |||||||||||||||||||||||||||||    
T  49745127 ggtcttggttcaaaatctttattggctcc 49745155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 54459575 - 54459480
Alignment:
Q  20 ggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttggtcttggttcaaaatct 118  Q
    ||||||||||| ||||||||| |  |||| || |||||  |||||||||| | |||||||||| | ||||||| |   || ||||||||||||||||||    
T  54459575 ggtcttggttcgaaatctttagtatctcccttcttttcattaacatcaatgtcattgtctccaaaagctgaaatg---ttgggtcttggttcaaaatct 54459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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