View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_high_4 (Length: 800)
Name: NF15423_high_4
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 664; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 11 - 782
Target Start/End: Complemental strand, 3572537 - 3571767
Alignment:
| Q |
11 |
cagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572537 |
cagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttcc |
3572438 |
T |
|
| Q |
111 |
catgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572437 |
catgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttag |
3572338 |
T |
|
| Q |
211 |
tgtttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgttatgttatggtgttatttatatgttgttttcaaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3572337 |
tgtttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgttatggtatggtgttatttatatgttgttttcaaca |
3572238 |
T |
|
| Q |
311 |
agataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacataccactctataaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||| |
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|
| T |
3572237 |
agataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgagcattacagttgcttctcaaaccacatatcactttaaaaa |
3572138 |
T |
|
| Q |
411 |
ttattttcttcctttcccaaacatatcaaatatccac---attttaaaataatatcattaaatatctttttcatccaatgagagtttgccaattgtaatt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3572137 |
ttattttcttcctttcccaaacatatcaaatatccacaataatatataataatatcattaaatatctttttcatccaataagagtttgccaattgtaatt |
3572038 |
T |
|
| Q |
508 |
tctggataggatgatcaataacgtacaaattcatgcatataacggtatataattatatatatgttgtagaagagggaccacattacatattggtcccatt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3572037 |
tctggataggatgatcaataacgtacaaattcatgcatataacggtatataat----tatatgttgtagaagagggaccacattacatattggtcccatt |
3571942 |
T |
|
| Q |
608 |
gctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattat |
707 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3571941 |
gctagttaatttgtggtgtgtgttgcatcaaatggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattat |
3571842 |
T |
|
| Q |
708 |
accannnnnnnnactaaatgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacaca |
782 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3571841 |
accattttttttactaaatgtcattataccatattctacagtttatgtttggaagcaatgcaaaatagacacaca |
3571767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 3585397 - 3585594
Alignment:
| Q |
11 |
cagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| |||||||| |
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|
| T |
3585397 |
cagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttcc |
3585496 |
T |
|
| Q |
111 |
catgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaatttt |
208 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
3585497 |
catcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatttt |
3585594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 3575821 - 3575635
Alignment:
| Q |
11 |
cagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcc |
110 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
3575821 |
cagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttcc |
3575722 |
T |
|
| Q |
111 |
catgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccat |
197 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |
|
|
| T |
3575721 |
catcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccat |
3575635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 3563840 - 3563623
Alignment:
| Q |
13 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| || | |||||||| |
|
|
| T |
3563840 |
gagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccca |
3563741 |
T |
|
| Q |
113 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
212 |
Q |
| |
|
||| |||| | || || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||| | |
|
|
| T |
3563740 |
ccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagtattttattc |
3563641 |
T |
|
| Q |
213 |
tttactaagtaaacaaat |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3563640 |
cttactaagtaaacaaat |
3563623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 3569488 - 3569276
Alignment:
| Q |
13 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
112 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| || | |||||||| |
|
|
| T |
3569488 |
gagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccca |
3569389 |
T |
|
| Q |
113 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
212 |
Q |
| |
|
||| |||| |||| || |||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || | ||||| || |
|
|
| T |
3569388 |
ccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccattgtggtatttttttg |
3569289 |
T |
|
| Q |
213 |
tttactaagtaaa |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3569288 |
cttactaagtaaa |
3569276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 13275767 - 13275581
Alignment:
| Q |
14 |
agaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccat |
113 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| ||||| || |||| |||| ||| ||||| ||||||||||| ||||||| | ||||| || |
|
|
| T |
13275767 |
agaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaaactttcttt---gtggttgttttt-tcatggtgacccttccaat |
13275672 |
T |
|
| Q |
114 |
gacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaa |
204 |
Q |
| |
|
|||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
13275671 |
accaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgtagaa |
13275581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 505 - 711
Target Start/End: Complemental strand, 3569005 - 3568808
Alignment:
| Q |
505 |
atttctggataggatgatcaataacgtacaaattcatgcatataacggtatataattatatatatgttgtagaagagggaccacattacatattggtccc |
604 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||| |||| |||||||| ||| || |||| ||||||||||||| | | ||||||||| || |
|
|
| T |
3569005 |
atttctggataggctaatcaataatgtacaaattcatacata--acggtataaaatcatga----gttgaagaagagggaccatagtgcatattggtacc |
3568912 |
T |
|
| Q |
605 |
attgctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttt----tttggctccatggataaaaacacatttatcctaattttatg |
700 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
3568911 |
attgctagttaatttgtg-------ttgcatcaaaaggacaaagaatatttcttttttctttggctcaatagataaaaaaacatttatcctaaaattatg |
3568819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 593 - 709
Target Start/End: Complemental strand, 8602528 - 8602413
Alignment:
| Q |
593 |
catattggtcccattgctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatccta |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||| |||| |||||| |||||||||||| |||| |
|
|
| T |
8602528 |
catattggtcccattgctagttaatttgtggtgtgtgttacatcaaatggacaaaacttatttctttttttgctcaatggat-aaaacacattta-ccta |
8602431 |
T |
|
| Q |
693 |
a-ttttatgtcattatac |
709 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
8602430 |
atttttatgttattatac |
8602413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 780
Target Start/End: Complemental strand, 3568821 - 3568766
Alignment:
| Q |
725 |
atgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacaca |
780 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
3568821 |
atgtcattataccatattttaccgtttatttttggaagcaatgcaaaatggacaca |
3568766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 782
Target Start/End: Complemental strand, 8602424 - 8602367
Alignment:
| Q |
725 |
atgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacaca |
782 |
Q |
| |
|
|||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8602424 |
atgttattatactatattatactgtttatgtttggaagcattgcaaaatagacacaca |
8602367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 3575500 - 3575427
Alignment:
| Q |
324 |
gtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacata |
398 |
Q |
| |
|
|||||||||||||||||||||| | | | | ||||||||||||| || ||||||| || | |||||||||||||| |
|
|
| T |
3575500 |
gtccatatcttatgaaatctatatct-tgattttctattggtttggagcattacacttacatctcaaaccacata |
3575427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 709
Target Start/End: Complemental strand, 8617497 - 8617387
Alignment:
| Q |
609 |
ctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttgg-ctccatggata---------aaaacacatttatcctaatttta |
698 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
8617497 |
ctagttaatttgtgttgtgtgttgaatcaaatggacaaaacatatttctttttttttctcaatggatataatcatataaaacacatttatcttaatttta |
8617398 |
T |
|
| Q |
699 |
tgtcattatac |
709 |
Q |
| |
|
||||||||||| |
|
|
| T |
8617397 |
tgtcattatac |
8617387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 38356857 - 38356807
Alignment:
| Q |
11 |
cagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttc |
61 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
38356857 |
cagagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttc |
38356807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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