View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_42 (Length: 332)
Name: NF15423_high_42
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_42 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 8605960 - 8606272
Alignment:
| Q |
19 |
catgactccgtgccggttttaactatctgcaattggagtcagagaggcatatgatcgatcttatatgagataaatatttgattcaatgttattttcttag |
118 |
Q |
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| T |
8605960 |
catgactccgcgctggttttaactatctgcaattggagtcagagaggcatacgatcgatcttatatgagataaatatttgattcaatgttattttcttag |
8606059 |
T |
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| Q |
119 |
aacaacaaatgttagtggttagtggagttgaatcaggatctctgtcatttcaatgcttatgtcctccaccacccaaaccaattcatctgttagtgctgtg |
218 |
Q |
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| T |
8606060 |
aacaacaaatgttagtggttagtggagttgaatcaggatctctgtcatttcaatgcttatgtcctccaccacccaaaccaattcatctgttagtgctgtg |
8606159 |
T |
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| Q |
219 |
attttagcagtaaannnnnnngtcattctcctatcagaaatgttgattcggatacaagtctcaatgcctgtaattctgtttactggttcatatatatatt |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
8606160 |
attttagcagtaaatttttttgtcattctcctatcagaaatgttgattcggatacaagt-tcaatgcctgtcattctgtttactggttcatatatatatt |
8606258 |
T |
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| Q |
319 |
tatgctttctgtcc |
332 |
Q |
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|||||||||||||| |
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| T |
8606259 |
tatgctttctgtcc |
8606272 |
T |
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