View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_43 (Length: 316)
Name: NF15423_high_43
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 34672537 - 34672836
Alignment:
| Q |
14 |
aggtgaaggacaaacaatggaggttattcagcaagccaagcttgattctcttataaatccttatacaaggagctggaattataatgctattaattattat |
113 |
Q |
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| T |
34672537 |
aggtgaaggacaaacaatggaggttattcagcaagccaagcttgattctcttataaatccttatacaaggagctggaattataatgctattaattattat |
34672636 |
T |
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| Q |
114 |
tttgatcatggtattgtacaacgtattcttaggacacctctatttaatcaggtagaggaggaccaattaatatggaaggctgagaggaacgggcactact |
213 |
Q |
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| T |
34672637 |
tttgatcatggtactgtacaacgtattcttaggacacctctatttaatcaggtagaggaggaccaattaatatggaaggccgagaggaacgagcactatt |
34672736 |
T |
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| Q |
214 |
ctgtcagaagcatgtatcgtttgtgtatggaagaaataggggatatttcatatttacacaggccgggctgctagtcagacatttggaagttgaaggctcc |
313 |
Q |
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| T |
34672737 |
ctgtcagaagcacgtatcgtttgtgtatggaagaaataggggatatttcatatttacacaggccgggctgctggtcagacatttggaaattgaaagctcc |
34672836 |
T |
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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 15332429 - 15332518
Alignment:
| Q |
227 |
gtatcgtttgtgtatggaagaaataggggatatttcatatttacacaggccgggctgctagtcagacatttggaagttgaaggctcctcc |
316 |
Q |
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| T |
15332429 |
gtatcatttgtgtatggaagaaatagaggataattcatatttgcacaggctggactgttgggcagacatttggaaattgaaagctcctcc |
15332518 |
T |
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