View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_46 (Length: 295)
Name: NF15423_high_46
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 49451065 - 49450795
Alignment:
| Q |
1 |
cttaattcacaatttatttcatgttaattgttgcatgcactgctttctagttactannnnnnnnnnnnn-attgtgggagttgagagtcgtcgcctactc |
99 |
Q |
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| T |
49451065 |
cttaattcacaatttatttcatgttaattattgcatgcactgctttctagttactatttttaaattttttattgtgggagttgagagtcgtcgcctactc |
49450966 |
T |
|
| Q |
100 |
ctaaattcccactgatgtagattttcaaatctgggcatatgtatggtgatctatgaaccacttccatgtgctaataatacactatctctctactttgttc |
199 |
Q |
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| T |
49450965 |
ctaaattcccactgatgtagattttcaaatctgggcatatgtatggtgatctatgaaccacttccatgtgctaataatacactatctctctactttgtta |
49450866 |
T |
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| Q |
200 |
aaattcaaatggatcccacgaaattatttagacaccacataaatttagcgagacttgtttaaatttcaacc |
270 |
Q |
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| T |
49450865 |
aaattcaaatggatcccacgaaattatttagacaccacataaatttagcgagacttgtttaaatttcaacc |
49450795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 47949117 - 47949055
Alignment:
| Q |
185 |
ctctctactttgttcaaattcaaatggatcccacgaaattatttagacaccacataaatttag |
247 |
Q |
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| T |
47949117 |
ctctctaattggttgaaattcaattggatcccacgaaatcatgtaggccccacataaatttag |
47949055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 9705304 - 9705350
Alignment:
| Q |
200 |
aaattcaaatggatcccacgaaattatttagacaccacataaattta |
246 |
Q |
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| T |
9705304 |
aaattcaaatggatcccacaaaattatgtagaccccacatgaattta |
9705350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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