View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_47 (Length: 293)
Name: NF15423_high_47
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 41198313 - 41198127
Alignment:
| Q |
12 |
aagaaaaccaaaacaagattcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaacacttataaatcaacaacacaa |
111 |
Q |
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| T |
41198313 |
aagaaaaccaaaacaagattcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaatacttataaatcaacaacacaa |
41198214 |
T |
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| Q |
112 |
accttagagaatgatggacagttaacatatatttttgatgttataacaataagaataatggtagcatgcaagaaatgagagaacctt |
198 |
Q |
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| T |
41198213 |
accttagagaatgatggacagttaacatatatttttgatgttataacaataagaataatggtagcatgcaagaaatgagagaacctt |
41198127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 41208292 - 41208129
Alignment:
| Q |
12 |
aagaaaaccaaaacaagattcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaacacttataaatcaa-caacaca |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| ||||||| |
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| T |
41208292 |
aagaaaaccaaaacacgattcatcactatcataaattcataatatatatacatatata------gagtaataagacaacacttataagtcaaacaacaca |
41208199 |
T |
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| Q |
111 |
aaccttagagaatgatggacagttaacatatatttttgatgttataacaataagaataatggtagcatgcaa |
182 |
Q |
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| T |
41208198 |
aacct-agagaatgatggaccgtta-catatatgtttgatgttataacaataagaacaatggtagcatgcaa |
41208129 |
T |
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