View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_50 (Length: 280)
Name: NF15423_high_50
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 54496458 - 54496710
Alignment:
| Q |
19 |
catgcagtgtttgagtacgataacgaaacagaatcagtgcacgaagtgaatgagcatgattatataatgtgtcatacaaatggagaacatgtggagcacc |
118 |
Q |
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| T |
54496458 |
catgcagtgtttgagtacgataacgaaacagaatcagtgcacgaagtgaatgagcatgattatataatgtgtcatacaaatggagaacatgtggagcacc |
54496557 |
T |
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| Q |
119 |
acgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgggattaaagctggctgtcgt |
218 |
Q |
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| T |
54496558 |
acgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgggattaaagctggctgtcgt |
54496657 |
T |
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| Q |
219 |
tgtccaaaacaagcatgacctagttctcccacctctaattacaatgcctatgc |
271 |
Q |
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| T |
54496658 |
tgtccaaaacaagcatgacctagttctcccacctctaattacaatgcctatgc |
54496710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 54504639 - 54504760
Alignment:
| Q |
100 |
ggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgg |
199 |
Q |
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| T |
54504639 |
ggagagcatgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgg |
54504738 |
T |
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| Q |
200 |
gattaaagctggctgtcgttgt |
221 |
Q |
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| T |
54504739 |
gtttaaagctagctgttgttgt |
54504760 |
T |
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