View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_53 (Length: 262)

Name: NF15423_high_53
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_53
NF15423_high_53
[»] chr4 (8 HSPs)
chr4 (1-165)||(26621472-26621636)
chr4 (78-144)||(11449796-11449862)
chr4 (216-255)||(26621382-26621421)
chr4 (63-146)||(11544854-11544939)
chr4 (55-117)||(15736016-15736080)
chr4 (53-100)||(3106282-3106329)
chr4 (53-117)||(12605846-12605913)
chr4 (216-248)||(22317396-22317428)
[»] chr7 (1 HSPs)
chr7 (216-249)||(10647319-10647352)
[»] scaffold0062 (1 HSPs)
scaffold0062 (216-248)||(1052-1084)
[»] chr2 (2 HSPs)
chr2 (53-117)||(1583000-1583066)
chr2 (216-248)||(23958923-23958955)
[»] chr5 (5 HSPs)
chr5 (61-102)||(20689474-20689515)
chr5 (52-99)||(19570501-19570549)
chr5 (216-248)||(25936774-25936806)
chr5 (216-248)||(26013219-26013251)
chr5 (53-100)||(28465239-28465287)
[»] chr3 (3 HSPs)
chr3 (76-117)||(8109156-8109197)
chr3 (53-100)||(11073624-11073672)
chr3 (216-248)||(12758920-12758952)
[»] scaffold0471 (1 HSPs)
scaffold0471 (51-100)||(2649-2700)
[»] scaffold0004 (1 HSPs)
scaffold0004 (53-100)||(210603-210651)
[»] chr8 (2 HSPs)
chr8 (53-100)||(22672968-22673016)
chr8 (53-100)||(27739070-27739118)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26621636 - 26621472
Alignment:
Q  1 caaccctttttggatgggcctatgttgggctcatgtttttgcgggttgggcctgaaggttagaaaaatacaagaaggggttgaagtgtgttggctttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26621636 caaccctttttggatgggcctatgttgggctcatgtttttgcgggttgggcctgaaggttagaaaaatacaagaaggggttgaagtgtgttggctttttc 26621537  T
Q  101 aatctttttctaagtgtattacactagtcagagtctgatgagttcatagtatgataatggcggat 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26621536 aatctttttctaagtgtattacactagtcagagtctgatgagttcatagtatgataatggcggat 26621472  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 11449862 - 11449796
Alignment:
Q  78 ggttgaagtgtgttggctttttcaatctttttctaagtgtattacactagtcagagtctgatgagtt 144  Q
    ||||||| ||||||||||||||||| |||||||||||||| || |||| ||||||||||||||||||    
T  11449862 ggttgaattgtgttggctttttcaaactttttctaagtgttttgcactggtcagagtctgatgagtt 11449796  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 26621421 - 26621382
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagtataatct 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26621421 ttatattggttcctcctacaatccaggagtagtataatct 26621382  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 11544854 - 11544939
Alignment:
Q  63 aaaaatacaagaaggg--gttgaagtgtgttggctttttcaatctttttctaagtgtattacactagtcagagtctgatgagttca 146  Q
    ||||| ||||||||||  |||||| |||||||||||||||||    ||||||||||| || |||| ||||||||||||||||||||    
T  11544854 aaaaacacaagaagggaggttgaattgtgttggctttttcaaaaaatttctaagtgttttgcactggtcagagtctgatgagttca 11544939  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 15736016 - 15736080
Alignment:
Q  55 aaggttagaaaaatacaagaa--ggggttgaagtgtgttggctttttcaatctttttctaagtgt 117  Q
    ||||| ||||||| |||||||  ||||||||| ||||||||||||||||| | ||||||||||||    
T  15736016 aaggtgagaaaaacacaagaaagggggttgaattgtgttggctttttcaaacattttctaagtgt 15736080  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 3106329 - 3106282
Alignment:
Q  53 tgaaggttagaaaaatacaagaaggggttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||||||||    
T  3106329 tgaaggtaagaaaaacacaagaaggggttgaattgtgttagctttttc 3106282  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 12605846 - 12605913
Alignment:
Q  53 tgaaggttagaaaaatacaagaagg---ggttgaagtgtgttggctttttcaatctttttctaagtgt 117  Q
    ||||||| ||||||| ||||||||    ||||||| | ||||||||||||||||||| ||||||||||    
T  12605846 tgaaggtgagaaaaacacaagaagttgaggttgaattatgttggctttttcaatcttcttctaagtgt 12605913  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 22317428 - 22317396
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    ||||| |||||||||||||||||||||||||||    
T  22317428 ttatactggttcctcctacaatccaggagtagt 22317396  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 10647352 - 10647319
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagta 249  Q
    ||||||||||||||||||||||||||||||||||    
T  10647352 ttatattggttcctcctacaatccaggagtagta 10647319  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 1052 - 1084
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    |||||||||||||||||||||||||||||||||    
T  1052 ttatattggttcctcctacaatccaggagtagt 1084  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 1583000 - 1583066
Alignment:
Q  53 tgaaggttagaaaaatacaagaaggg--gttgaagtgtgttggctttttcaatctttttctaagtgt 117  Q
    ||||||| ||||||| ||||||||||  |||||| |||||||||||||  || ||||||||||||||    
T  1583000 tgaaggtaagaaaaacacaagaagggaggttgaattgtgttggcttttctaaactttttctaagtgt 1583066  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 23958923 - 23958955
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    ||||||||||||||| |||||||||||||||||    
T  23958923 ttatattggttcctcttacaatccaggagtagt 23958955  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 20689474 - 20689515
Alignment:
Q  61 agaaaaatacaagaaggggttgaagtgtgttggctttttcaa 102  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  20689474 agaaaaatacaagaaggggttgaattgtgttggttctttcaa 20689515  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 19570549 - 19570501
Alignment:
Q  52 ctgaaggttagaaaaatacaagaagg-ggttgaagtgtgttggcttttt 99  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||    
T  19570549 ctgaaggtgagaaaaatacaagaaggaggttgaattgagttggcttttt 19570501  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 25936806 - 25936774
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    ||||||||||||||||||||||||| |||||||    
T  25936806 ttatattggttcctcctacaatccaagagtagt 25936774  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 26013219 - 26013251
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    ||||||||||||||||||||| |||||||||||    
T  26013219 ttatattggttcctcctacaaaccaggagtagt 26013251  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 28465287 - 28465239
Alignment:
Q  53 tgaaggttagaaaaatacaagaagggg-ttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  28465287 tgaaggtaagaaaaacacaagaagggggttgaattgtgttggctttttc 28465239  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 8109156 - 8109197
Alignment:
Q  76 ggggttgaagtgtgttggctttttcaatctttttctaagtgt 117  Q
    ||||||||| |||||||| |||||||| ||||||||||||||    
T  8109156 ggggttgaattgtgttggttttttcaaactttttctaagtgt 8109197  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 11073624 - 11073672
Alignment:
Q  53 tgaaggttagaaaaatacaagaagggg-ttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  11073624 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 11073672  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 12758920 - 12758952
Alignment:
Q  216 ttatattggttcctcctacaatccaggagtagt 248  Q
    |||||||||||||| ||||||||||||||||||    
T  12758920 ttatattggttccttctacaatccaggagtagt 12758952  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 2649 - 2700
Alignment:
Q  51 cctgaaggttagaaaaatacaagaa--ggggttgaagtgtgttggctttttc 100  Q
    ||||||||| ||||||| |||||||  ||||||||| |||||||||||||||    
T  2649 cctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggctttttc 2700  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 210603 - 210651
Alignment:
Q  53 tgaaggttagaaaaatacaagaagggg-ttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  210603 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 210651  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 22672968 - 22673016
Alignment:
Q  53 tgaaggttagaaaaatacaagaagggg-ttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  22672968 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 22673016  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 27739070 - 27739118
Alignment:
Q  53 tgaaggttagaaaaatacaagaa-ggggttgaagtgtgttggctttttc 100  Q
    ||||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  27739070 tgaaggtgagaaaaatacaagaagggggttgaattgtgttagctttttc 27739118  T

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