View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_56 (Length: 258)
Name: NF15423_high_56
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44872395 - 44872157
Alignment:
| Q |
1 |
cttctcctaatgccaaaaactatactactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcacc |
100 |
Q |
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| T |
44872395 |
cttctcctaatgccaaaaactatactactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaaccgcagcacc |
44872296 |
T |
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| Q |
101 |
aatttcttcgtctccattagagttgaaaaagctatcgagagaatcccatcaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacga |
200 |
Q |
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| T |
44872295 |
aatttcttcgtctccattagagttgaaaaagcgatcgagagaatcccatgaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacga |
44872196 |
T |
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| Q |
201 |
cagagaaaatccaaggaagcagtaacaagagcatttact |
239 |
Q |
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| T |
44872195 |
cagagaaaatccaaggaagcagtagcaagagcatttact |
44872157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 47527285 - 47527371
Alignment:
| Q |
15 |
aaaaactatactactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcacca |
101 |
Q |
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| T |
47527285 |
aaaaaccatattactcttaaaaaagcctgcaagagttgcattgaagaaggagggtgttccctcaaacacccttcaactccagcacca |
47527371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 47522036 - 47522198
Alignment:
| Q |
15 |
aaaaactatactactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagca------ccaatttctt |
108 |
Q |
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| T |
47522036 |
aaaaaccatattactcttagaaaagcctgtgagagttgcattgaagaaggagggtgttcccccgaacgcccttcaactgcagcaataacgtcaatttctt |
47522135 |
T |
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| Q |
109 |
cgtctccattagagttgaaaaagctatcgagagaatcccatcaaacagcagcagcaacaattt |
171 |
Q |
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| T |
47522136 |
cgcctccactacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaattt |
47522198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 47527856 - 47527901
Alignment:
| Q |
100 |
caatttcttcgtctccattagagttgaaaaagctatcgagagaatc |
145 |
Q |
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| T |
47527856 |
caatttcttcgtctccattacagttgaaagagcaaccgagagaatc |
47527901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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