View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_61 (Length: 244)
Name: NF15423_high_61
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_61 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 50804591 - 50804355
Alignment:
| Q |
8 |
gtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
107 |
Q |
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| T |
50804591 |
gtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
50804492 |
T |
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| Q |
108 |
gcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
207 |
Q |
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| T |
50804491 |
gcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
50804392 |
T |
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| Q |
208 |
catctttttgtttgctttgtttggattgataggagat |
244 |
Q |
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| T |
50804391 |
catctttttgtttgctttgtttggattgataggagat |
50804355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 50871286 - 50871522
Alignment:
| Q |
8 |
gtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
107 |
Q |
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| T |
50871286 |
gtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
50871385 |
T |
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| Q |
108 |
gcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
207 |
Q |
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| T |
50871386 |
gcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
50871485 |
T |
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| Q |
208 |
catctttttgtttgctttgtttggattgataggagat |
244 |
Q |
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| T |
50871486 |
catctttttgtttgctttgtttggattgataggagat |
50871522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 19057593 - 19057827
Alignment:
| Q |
7 |
agtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttg |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19057593 |
agtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaattagacaattcctaatttgcagtgataaactttttg |
19057692 |
T |
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| Q |
107 |
tgcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatct |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |
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| T |
19057693 |
tgcttcttataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactgttgagtcgggttgaataacatacttttatatcattgtattt |
19057792 |
T |
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| Q |
207 |
acatctttttgtttgctttgtttggattgatagga |
241 |
Q |
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| T |
19057793 |
acatctttttgtttgctttgtttggattgatagga |
19057827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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