View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_62 (Length: 242)

Name: NF15423_high_62
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_62
NF15423_high_62
[»] chr3 (19 HSPs)
chr3 (1-224)||(54468577-54468800)
chr3 (10-156)||(54459182-54459328)
chr3 (110-182)||(11241013-11241085)
chr3 (21-184)||(54468851-54469014)
chr3 (10-176)||(11227942-11228108)
chr3 (48-156)||(11240571-11240679)
chr3 (11-154)||(54468725-54468868)
chr3 (131-176)||(11240707-11240752)
chr3 (10-82)||(11228270-11228342)
chr3 (10-82)||(11228504-11228576)
chr3 (26-82)||(54459178-54459234)
chr3 (9-85)||(54459790-54459866)
chr3 (43-175)||(54468782-54468914)
chr3 (9-156)||(11240883-11241030)
chr3 (28-81)||(11241036-11241089)
chr3 (43-156)||(54459260-54459373)
chr3 (21-82)||(54469112-54469173)
chr3 (10-82)||(54459478-54459550)
chr3 (24-156)||(54459797-54459929)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 54468800 - 54468577
Alignment:
Q  1 catcaataactcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54468800 catcaataactcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgactctcttcttttc 54468701  T
Q  101 ctcagcattaatgtcattatcttcatattttgaaacattgggtcttggttcaaaattttcagtgactcccttctttctcttagcacggatgatgtcattt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54468700 ctcagcattaatgtcattatcttcatattttgaaacatttggtcttggttcaaaatttttagtgactcccttctttctcttagcacggatgatgtcattt 54468601  T
Q  201 tctatggtgacttgtgtgtctatt 224  Q
    ||||||||||||||||||||||||    
T  54468600 tctatggtgacttgtgtgtctatt 54468577  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 54459328 - 54459182
Alignment:
Q  10 ctcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcatt 109  Q
    ||||||| || |||||| ||||||| |||||  ||||||||||||||| ||| |||||||||||||| ||||||||  || |||||||||| |||||||     
T  54459328 ctcccttattttccttaacatcaatgtcattgtctccataagctgaaatattgggtcttggttcaaaatctttgactggtttcttcttttcatcagcatc 54459229  T
Q  110 aatgtcattatcttcatattttgaaacattgggtcttggttcaaaat 156  Q
    |||| |||| ||| ||||   ||||| ||| ||||| ||||||||||    
T  54459228 aatgacattttctccataagctgaaatattaggtctaggttcaaaat 54459182  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 11241085 - 11241013
Alignment:
Q  110 aatgtcattatcttcatattttgaaacattgggtcttggttcaaaattttcagtgactcccttctttctctta 182  Q
    ||||||||| ||| ||||  |||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  11241085 aatgtcattttctccataagttgaaatattgggtcttggttcaaaatcttcagtgactcccttctttttctta 11241013  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 54469014 - 54468851
Alignment:
Q  21 tccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcattaatgtcattat 120  Q
    |||||| |||||||  ||||  ||||||||||||||||||| ||||||||||  || ||||| |||| | |||||||| ||| | | |  |   |||| |    
T  54469014 tccttaacatcaataccattgtctccataagctgaaacatttggtcttggtttgaaatctttaacgactttcttctttcccttaacttctacaccattgt 54468915  T
Q  121 cttcatattttgaaacattgggtcttggttcaaaattttcagtgactcccttctttctcttagc 184  Q
    || |||||  ||||||||||  |||||||||||||| |||||||| |||||||||| |||||||    
T  54468914 ctccatatgctgaaacattgtatcttggttcaaaatcttcagtgattcccttctttttcttagc 54468851  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 11228108 - 11227942
Alignment:
Q  10 ctcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcatt 109  Q
    |||||||||| |||||  ||||||| |||||  |||||||||||||||  || |||||||||||||| |||||  ||  || ||||||||| | | |||     
T  11228108 ctcccttcttttccttgacatcaatatcattgtctccataagctgaaatgttgggtcttggttcaaaatctttagcggctcccttcttttctttaacatc 11228009  T
Q  110 aatgtcattatcttcatattttgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 176  Q
    ||| ||||| ||| ||||   |||||  |||||||| |||||||||| || |||| |||| ||||||    
T  11228008 aatctcattgtctccataagctgaaatgttgggtctaggttcaaaatctttagtgtctccattcttt 11227942  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 11240679 - 11240571
Alignment:
Q  48 taagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcattaatgtcattatcttcatattttgaaacattgggtcttg 147  Q
    |||||||||| ||||||||||||||| || |||||||||| | |||||||||||| | |||  ||| |||| ||| |||||  |||||  ||||||| ||    
T  11240679 taagctgaaatattaggtcttggttcgaaatctttgacgactttcttcttttccttaacatctatggcattgtctccatatgctgaaatgttgggtcgtg 11240580  T
Q  148 gttcaaaat 156  Q
    | |||||||    
T  11240579 gctcaaaat 11240571  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 54468868 - 54468725
Alignment:
Q  11 tcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcatta 110  Q
    ||||||||| | |||||| ||||  |||||  ||||||||||||||||||| |||||||||||||| || |  |  | || |||||| |||| ||||| |    
T  54468868 tcccttctttttcttagcttcaacgtcattgtctccataagctgaaacattgggtcttggttcaaaatcatcaataactcccttcttatccttagcatca 54468769  T
Q  111 atgtcattatcttcatattttgaaacattgggtcttggttcaaa 154  Q
    || |||||  || ||||   ||||||||| ||||||||||||||    
T  54468768 atttcatttgctccataagctgaaacattaggtcttggttcaaa 54468725  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 11240752 - 11240707
Alignment:
Q  131 tgaaacattgggtcttggttcaaaattttcagtgactcccttcttt 176  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  11240752 tgaaatattgggtcttggttcaaaatctttagtgactcccttcttt 11240707  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 11228342 - 11228270
Alignment:
Q  10 ctcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtcttt 82  Q
    |||||||||| |||||| ||||||| |||||  |||||||||||||||  || |||| ||||||||| |||||    
T  11228342 ctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgttgggtcgtggttcaaaatcttt 11228270  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 11228576 - 11228504
Alignment:
Q  10 ctcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtcttt 82  Q
    |||||||||| |||||| ||||||| |||||  |||||||||||||||  || |||| ||||||||| |||||    
T  11228576 ctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgttgggtcgtggttcaaaatcttt 11228504  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 54459234 - 54459178
Alignment:
Q  26 agcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtcttt 82  Q
    |||||||||  ||||| ||||||||||||||| ||||||||| |||||||| |||||    
T  54459234 agcatcaatgacattttctccataagctgaaatattaggtctaggttcaaaatcttt 54459178  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 54459866 - 54459790
Alignment:
Q  9 actcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgac 85  Q
    ||||||||||| || ||| ||||||| |||||  |||||||||||||||  || | |||||||||||| ||||||||    
T  54459866 actcccttcttttctttaacatcaatgtcattgtctccataagctgaaatgttggttcttggttcaaaatctttgac 54459790  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 54468914 - 54468782
Alignment:
Q  43 ctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcattaatgtcattatcttcatattttgaaacattggg 142  Q
    ||||||| |||||||||||   |||||||||||| ||||    || || |||||||| || ||| | || |||||| ||| ||||   ||||||||||||    
T  54468914 ctccatatgctgaaacattgtatcttggttcaaaatcttcagtgattcccttctttttcttagcttcaacgtcattgtctccataagctgaaacattggg 54468815  T
Q  143 tcttggttcaaaattttcagtgactcccttctt 175  Q
    ||||||||||||||  ||| | |||||||||||    
T  54468814 tcttggttcaaaatcatcaataactcccttctt 54468782  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 11241030 - 11240883
Alignment:
Q  9 actcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcat 108  Q
    ||||||||||| | |||| |||||||  ||||  ||||  ||||||||| | ||||||||||||| || |||||||||  | |||||||||||| | |||    
T  11241030 actcccttctttttcttaacatcaatgacattgtctccgcaagctgaaatactaggtcttggttcgaaatctttgacggctttcttcttttccttaacat 11240931  T
Q  109 taatgtcattatcttcatattttgaaacattgggtcttggttcaaaat 156  Q
      ||| |||  ||| ||||    |||| ||||||||||||||||||||    
T  11240930 ctatgacatcgtctccataagccgaaatattgggtcttggttcaaaat 11240883  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 11241089 - 11241036
Alignment:
Q  28 catcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctt 81  Q
    ||||||| |||||| ||||||||| ||||| ||| |||||||||||||| ||||    
T  11241089 catcaatgtcattttctccataagttgaaatattgggtcttggttcaaaatctt 11241036  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 54459373 - 54459260
Alignment:
Q  43 ctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcattaatgtcattatcttcatattttgaaacattggg 142  Q
    |||||||||||||||  || |||||||| ||||| || |||  |  || ||| ||||||| | ||| ||||||||| ||| ||||   ||||| ||||||    
T  54459373 ctccataagctgaaatgttgggtcttggctcaaaatcgttggtggctcccttattttccttaacatcaatgtcattgtctccataagctgaaatattggg 54459274  T
Q  143 tcttggttcaaaat 156  Q
    ||||||||||||||    
T  54459273 tcttggttcaaaat 54459260  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 54469173 - 54469112
Alignment:
Q  21 tccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtcttt 82  Q
    |||||| ||||||| ||| |  |||||||||| |||||||| |||||||||||||| |||||    
T  54469173 tccttaacatcaatatcactatctccataagcagaaacattgggtcttggttcaaaatcttt 54469112  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 54459550 - 54459478
Alignment:
Q  10 ctcccttcttatccttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtcttt 82  Q
    |||||||||| || ||| ||||||| |||||  ||||| |||||||||  || |||||||||||||| |||||    
T  54459550 ctcccttcttttcattaacatcaatgtcattgtctccaaaagctgaaatgttgggtcttggttcaaaatcttt 54459478  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 54459929 - 54459797
Alignment:
Q  24 ttagcatcaatttcatttgctccataagctgaaacattaggtcttggttcaaagtctttgacgagtctcttcttttcctcagcattaatgtcattatctt 123  Q
    |||||||||||  ||||  |||||||||||||||  || |||||||| ||||| || |||  || || ||||||||| | | ||| ||||||||| |||     
T  54459929 ttagcatcaatgacattgtctccataagctgaaatgttgggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgtctc 54459830  T
Q  124 catattttgaaacattgggtcttggttcaaaat 156  Q
    ||||   |||||  |||| ||||||||||||||    
T  54459829 cataagctgaaatgttggttcttggttcaaaat 54459797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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