View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_63 (Length: 241)
Name: NF15423_high_63
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 7590123 - 7589984
Alignment:
| Q |
77 |
acttaaacaattctcatggtatgctacacaaaccacaaaatacacactcatctctctaatagatccttatggtaccaaacattatttataccttatttct |
176 |
Q |
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| T |
7590123 |
acttaaacaattctcatggtatgctacacaaa-------atacacacccatctctctaaaagatcgtcatggtaccaaacattatttattccttatttct |
7590031 |
T |
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| Q |
177 |
tcaatttaaaaccaagacaccaattttcttattgtcacacgcctttgtct |
226 |
Q |
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| T |
7590030 |
---atttaaaaccaagacaccaattttcttattgtcacacgcctttgtct |
7589984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 21492318 - 21492194
Alignment:
| Q |
98 |
tgctacacaaaccacaaaatacacactcatctctctaatagatccttatggtaccaaacattatttataccttatttcttcaatttaaaaccaagacacc |
197 |
Q |
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| T |
21492318 |
tgctacacaaaccacaaa-tacacacttatctctctaaaagatccttatgattccaaacattatttattctttatttct---atttaaaaccaagacacc |
21492223 |
T |
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| Q |
198 |
aattttcttattgtcacacgcctttgtct |
226 |
Q |
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| T |
21492222 |
aattttcttattgtcacacgcctttgtct |
21492194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 39183715 - 39183787
Alignment:
| Q |
41 |
tgctatctagtatccataatacacaattaagaagagacttaaacaattctcatggtatgctacacaaaccaca |
113 |
Q |
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| T |
39183715 |
tgctatctagtatccataatacacaattaagaagagacttaaacaattctcatggtatgctacacataccaca |
39183787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 39183824 - 39183891
Alignment:
| Q |
159 |
tatttataccttatttcttcaatttaaaaccaagacaccaattttcttattgtcacacgcctttgtct |
226 |
Q |
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| T |
39183824 |
tatttatatcttatttcttcaatttaaaaccaagacaccaattttcttattgtcacacgcctttgtct |
39183891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7593624 - 7593572
Alignment:
| Q |
19 |
atataagcctcgataataactgtgctatctagtatccataatacacaattaag |
71 |
Q |
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| T |
7593624 |
atataagcctctataataactatgctatctagtatccataacacacaattaag |
7593572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 39183787 - 39183823
Alignment:
| Q |
160 |
atttataccttatttcttcaatttaaaaccaagacac |
196 |
Q |
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| T |
39183787 |
atttatatcttatttcttcaatttaaaaccaagacac |
39183823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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