View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_64 (Length: 237)

Name: NF15423_high_64
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_64
NF15423_high_64
[»] chr8 (5 HSPs)
chr8 (123-218)||(38108819-38108914)
chr8 (1-115)||(13089765-13089883)
chr8 (1-115)||(4034300-4034402)
chr8 (34-107)||(45547920-45547993)
chr8 (34-114)||(24581449-24581529)
[»] chr6 (5 HSPs)
chr6 (1-115)||(12912247-12912361)
chr6 (5-107)||(165502-165604)
chr6 (20-114)||(18972614-18972707)
chr6 (20-113)||(24393917-24394009)
chr6 (37-115)||(7093956-7094033)
[»] chr1 (7 HSPs)
chr1 (1-115)||(34549350-34549464)
chr1 (12-115)||(45432373-45432476)
chr1 (5-115)||(19227886-19227995)
chr1 (34-114)||(33936453-33936533)
chr1 (34-107)||(4532094-4532167)
chr1 (34-115)||(13182664-13182745)
chr1 (34-107)||(33766376-33766449)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-114)||(964-1077)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-115)||(94867-94981)
[»] chr7 (6 HSPs)
chr7 (1-115)||(40871301-40871415)
chr7 (5-107)||(12622911-12623013)
chr7 (34-115)||(11621384-11621465)
chr7 (34-107)||(28782022-28782095)
chr7 (37-115)||(15669718-15669795)
chr7 (34-114)||(17193886-17193965)
[»] chr4 (6 HSPs)
chr4 (5-107)||(37870653-37870755)
chr4 (34-114)||(54898888-54898968)
chr4 (14-114)||(23106753-23106852)
chr4 (37-86)||(40345798-40345847)
chr4 (34-107)||(43499317-43499390)
chr4 (35-87)||(36651768-36651820)
[»] chr2 (5 HSPs)
chr2 (5-114)||(11031790-11031898)
chr2 (34-115)||(34394484-34394565)
chr2 (34-114)||(37647985-37648065)
chr2 (34-107)||(2702265-2702338)
chr2 (34-107)||(27271660-27271733)
[»] chr5 (3 HSPs)
chr5 (34-107)||(19021409-19021482)
chr5 (48-111)||(926759-926822)
chr5 (40-115)||(22580389-22580464)
[»] chr3 (1 HSPs)
chr3 (42-114)||(50642385-50642457)
[»] scaffold0074 (1 HSPs)
scaffold0074 (54-114)||(23834-23894)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 38108914 - 38108819
Alignment:
Q  123 ctattgtttgtgactcatgtgatagagttgaagttgatgcgacgtcgtcaagcaaaacgaactccggctacacgcttttccttcatttggagtttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38108914 ctattgtttgtgactcatgtgatagagttgaagttgatgcgacgtcgtcaagcaaaacgaactccggctacacgcttttccttcatttggagtttc 38108819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13089883 - 13089765
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactcctta----tactaaaatctccagacttttaggaatat 96  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||     | || |||||||||||||||||| |||||    
T  13089883 tttaggctccaactctttgttatttcttgtattttgactctttcagctggggttttggcactccttccttgtgctgaaatctccagacttttagtaatat 13089784  T
Q  97 aatccattttaacttcttc 115  Q
    ||||||||||| |||||||    
T  13089783 aatccattttagcttcttc 13089765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4034402 - 4034300
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||||||||||||||||| ||||||||||||||||||            ||| ||||||||||||| | ||||||||| ||||||||||| ||||||||     
T  4034402 tttaggctccaactctttgttatttcttgtattttga------------gggttttggcactccttgtgctaaaatcttcagacttttagtaatataatt 4034315  T
Q  101 cattttaacttcttc 115  Q
    ||||||| |||||||    
T  4034314 cattttagcttcttc 4034300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 45547920 - 45547993
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    ||||||||||||||||||| ||||||||||||| | || |||||||||| |||| || ||| ||||||||||||    
T  45547920 ttgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatttaatccatttta 45547993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 24581529 - 24581449
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    |||| |||||||||||||| |||| ||||||||||||| |||| | |||||||| |  |||||||| ||||||| ||||||    
T  24581529 ttgattctttcagctggggttttgacactccttatactgaaatattcagactttcaataatataattcattttagcttctt 24581449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 12912361 - 12912247
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||| | || |||||||||||||||||| |||||||||    
T  12912361 tttaggctccaactctttgttatttcttgtattttgactctttcatctggggttttgacactccttgtgctgaaatctccagacttttagtaatataatc 12912262  T
Q  101 cattttaacttcttc 115  Q
    ||||||| |||||||    
T  12912261 cattttagcttcttc 12912247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 165502 - 165604
Alignment:
Q  5 ggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatt 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| | || ||||||| |||||||||  |||||||||||||    
T  165502 ggctccaactctttgttatttcttgtattttgactctttcagctggggttttgacacttcttgtgctgaaatctcaagacttttaataatataatccatt 165601  T
Q  105 tta 107  Q
    |||    
T  165602 tta 165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 18972707 - 18972614
Alignment:
Q  20 ttatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    |||||||||||| || | |||||||||||  || ||||||||||||| | || ||||||| || ||||||| ||||||||| |||||||||||||    
T  18972707 ttatttcttgtaatt-gtctctttcagctaaggttttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaattttaacttctt 18972614  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 24393917 - 24394009
Alignment:
Q  20 ttatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttct 113  Q
    |||||||||||| || |||||||||||||  || ||||||||||||| | || ||||||| || ||||||| ||||||||| |||||| |||||    
T  24393917 ttatttcttgtaatt-gactctttcagctaaggttttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaattttagcttct 24394009  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 7093956 - 7094033
Alignment:
Q  37 actctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    |||||||||||||||| ||| ||||| ||| | ||||||| ||||||| || || | |||| |||||||||||||||||    
T  7093956 actctttcagctggggtttttgcacttcttgtgctaaaatttccagac-ttcagtattatattccattttaacttcttc 7094033  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34549350 - 34549464
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||| |||||||||    
T  34549350 tttatgctcaaactctttgttatttcttgtattttgactctttcagctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatc 34549449  T
Q  101 cattttaacttcttc 115  Q
    ||||||| |||||||    
T  34549450 cattttagcttcttc 34549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 45432476 - 45432373
Alignment:
Q  12 actctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaactt 111  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||| |||||||||||||||| |||    
T  45432476 actctttgttatttcttgtattttgactctttcagctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatccattttagctt 45432377  T
Q  112 cttc 115  Q
    ||||    
T  45432376 cttc 45432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 19227995 - 19227886
Alignment:
Q  5 ggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatt 104  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| | || |||||||||| |||| || |||||||||||||    
T  19227995 ggctccaattctttgttatttcttgtattt-gactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccatt 19227897  T
Q  105 ttaacttcttc 115  Q
    ||| |||||||    
T  19227896 ttagcttcttc 19227886  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 33936453 - 33936533
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    ||||||||||||||||||  ||||||||||||| | || ||||||||||||||| || |||||||||||||||||||||||    
T  33936453 ttgactctttcagctgggattttggcactccttgtcctgaaatctccagactttcagtaatataatccattttaacttctt 33936533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 4532167 - 4532094
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    |||||||||| | |||||| ||||||||||||| | || ||||||||||||||| || | | ||||||||||||    
T  4532167 ttgactcttttacctggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccatttta 4532094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 13182664 - 13182745
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    |||||||||| || ||||| |||||||||||||||||| |||| ||||| |||| || | | ||||| ||||||| ||||||    
T  13182664 ttgactcttttagttggggttttggcactccttatactgaaatttccaggctttcagtattttaatctattttaatttcttc 13182745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 33766376 - 33766449
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    |||||||||| | |||||| ||||||||||||| | || ||||||||||||||| || | | ||||||||||||    
T  33766376 ttgactcttttaactggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccatttta 33766449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 964 - 1077
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||| | |||||||||    
T  964 tttaagctccaactctttgttatttcttgtattttgactctttcagctggggttttgtcactccttatgctgaaatctccagactttttgtaatataatc 1063  T
Q  101 cattttaacttctt 114  Q
    ||||||| ||||||    
T  1064 cattttagcttctt 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 94867 - 94981
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| | || |||||||||| ||||||  |||||||||    
T  94867 tttaggctccaactctttgttatttcttgtattttgactctttcagctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatc 94966  T
Q  101 cattttaacttcttc 115  Q
    ||||||| |||||||    
T  94967 cattttagcttcttc 94981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40871415 - 40871301
Alignment:
Q  1 tttaggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| | || |||||||||| ||||||  |||||||||    
T  40871415 tttaggctccaactctttgttatttcttgtattttgactctttcagctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatc 40871316  T
Q  101 cattttaacttcttc 115  Q
    ||||||| |||||||    
T  40871315 cattttagcttcttc 40871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 12623013 - 12622911
Alignment:
Q  5 ggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatt 104  Q
    |||||||||||||| |||||||||||||||||||||| |||  ||| | |||| ||||| |||| ||||||||||||| |||| || |||||||||||||    
T  12623013 ggctccaactctttgttatttcttgtattttgactctatcaattggagttttgacactctttatgctaaaatctccaggctttcagtaatataatccatt 12622914  T
Q  105 tta 107  Q
    |||    
T  12622913 tta 12622911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 11621384 - 11621465
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    ||||||||||||||||||| ||||||||||||| | || |||||||||| |||| || |||||||||||||||| |||||||    
T  11621384 ttgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 11621465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 28782095 - 28782022
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||||| |||| || | | ||||||||||||    
T  28782095 ttgactcttttagctggggttttggcactccttgtgctgaaatctccaggctttcagtattttaatccatttta 28782022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 15669718 - 15669795
Alignment:
Q  37 actctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    |||||||||||||||| ||| ||||| ||||| || |||| ||||| | || || |||||| |||||||||||||||||    
T  15669718 actctttcagctggggtttttgcacttcttatgctgaaatttccaggc-ttcagtaatatattccattttaacttcttc 15669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 17193965 - 17193886
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    |||||| |||||||||||  |||| ||||||||||||| |||||||| | |||| || | | |||| ||||||||||||||    
T  17193965 ttgactgtttcagctggga-tttgacactccttatactgaaatctcccggctttcagtattttaatacattttaacttctt 17193886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 37870755 - 37870653
Alignment:
Q  5 ggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatt 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||||||| || |||||||||||||    
T  37870755 ggctccaactctttgttatttcttgtattttgactctttcagctggggttttggcactccttgtgctgaaatctccagactttgagtaatataatccatt 37870656  T
Q  105 tta 107  Q
    |||    
T  37870655 tta 37870653  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 54898968 - 54898888
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||| ||||| || |||||| | ||||||||||||||    
T  54898968 ttgactctttcagctgaggttttgacactccttatactaaaatctccaaactttcagtaatatatttcattttaacttctt 54898888  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 23106852 - 23106753
Alignment:
Q  14 tctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttct 113  Q
    ||||| ||||||||||||||| ||||||||||  ||||| ||||||||||||||| || ||||||||| ||||| || ||||||||  |||||| |||||    
T  23106852 tctttgttatttcttgtattt-gactctttcaaatggggttttggcactccttatgctgaaatctccatactttcagtaatataatttattttagcttct 23106754  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 40345847 - 40345798
Alignment:
Q  37 actctttcagctggggctttggcactccttatactaaaatctccagactt 86  Q
    |||||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  40345847 actctttcagctggggtttttgcacttcttatactaaaatttccagactt 40345798  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 43499317 - 43499390
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||||  |||| || | | ||||||||||||    
T  43499317 ttgactcttttagctggggttttggcactccttgtgctgaaatctccaagctttcagtattttaatccatttta 43499390  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 36651820 - 36651768
Alignment:
Q  35 tgactctttcagctggggctttggcactccttatactaaaatctccagacttt 87  Q
    ||||||||| |||||||| ||||||||||||| | || ||||||||| |||||    
T  36651820 tgactcttttagctggggttttggcactccttgtgctgaaatctccaaacttt 36651768  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 11031790 - 11031898
Alignment:
Q  5 ggctccaactctttattatttcttgtattttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatt 104  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||| |  ||||| || ||||    
T  11031790 ggctccaactctttgttatttcttgtattt-gactctttcagctggggttttggcactccttatgctgaaatctccagactttcaataatatcattcatt 11031888  T
Q  105 ttaacttctt 114  Q
    ||| ||||||    
T  11031889 ttagcttctt 11031898  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 34394565 - 34394484
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    ||||||||||||||||||| ||||||||||||| |  | ||||||  || |||| || |||||||| |||||||||||||||    
T  34394565 ttgactctttcagctggggttttggcactccttgtgttgaaatctttaggctttcagtaatataattcattttaacttcttc 34394484  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 37647985 - 37648065
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    |||||||||| ||||| || ||||||||||||| | || ||||||||| ||||| || | | ||||||||||||| |||||    
T  37647985 ttgactcttttagctgaggttttggcactccttgtgctgaaatctccaaactttcagtattttaatccattttaatttctt 37648065  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 2702338 - 2702265
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    ||||||||||||||||||| ||||||||||||| | || ||||||  || |||| || | | ||||||||||||    
T  2702338 ttgactctttcagctggggttttggcactccttgtgctgaaatcttgaggctttcagtattttaatccatttta 2702265  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 27271660 - 27271733
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    ||||||||||||||||| | |||| |||||||| | || |||||||||| |||| || ||| ||||| ||||||    
T  27271660 ttgactctttcagctggagttttgacactccttgtgctgaaatctccaggctttcagtaatttaatctatttta 27271733  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 19021409 - 19021482
Alignment:
Q  34 ttgactctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccatttta 107  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||    
T  19021409 ttgactcttttagctggggttttggcactccttatactgaaatctccaagctttcaataatttaatccatttta 19021482  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 926759 - 926822
Alignment:
Q  48 tggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaactt 111  Q
    ||||| ||||||||||||| | || ||||||||| | ||| || ||||||||||||||||||||    
T  926759 tggggttttggcactccttgtgctgaaatctccaaattttcagtaatataatccattttaactt 926822  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 22580464 - 22580389
Alignment:
Q  40 ctttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttcttc 115  Q
    ||||||||||||| |||| |||| ||| |||| ||||||  || |||| || |||||| |||||||||||||||||    
T  22580464 ctttcagctggggttttgacacttcttgtactgaaatctttaggctttcagtaatatattccattttaacttcttc 22580389  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 50642457 - 50642385
Alignment:
Q  42 ttcagctggggctttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    ||||||||||| || |||||||||||| || ||||||||||  ||| || |||||||| ||||||||||||||    
T  50642457 ttcagctggggtttcggcactccttatgctgaaatctccaggttttcagtaatataattcattttaacttctt 50642385  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 23834 - 23894
Alignment:
Q  54 tttggcactccttatactaaaatctccagacttttaggaatataatccattttaacttctt 114  Q
    ||||||||||||| | || ||||||| || ||||||| ||||||||| |||||| ||||||    
T  23834 tttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaattttagcttctt 23894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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