View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_65 (Length: 236)
Name: NF15423_high_65
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 14310717 - 14310930
Alignment:
| Q |
13 |
tgaagcagatcagaaatccaaacgtgagagcatggcttgatgctgtcaaagatgctgtgttagatgcagaggatctcttggaagaaattgactacgaagt |
112 |
Q |
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| T |
14310717 |
tgaagcagatcagaaatccaaacgtgagagcatggcttgatgctgtcaaagatgctgtgttagatgcagaggatctcttggaagaaattgactttgaggt |
14310816 |
T |
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| Q |
113 |
ttccaaatgcaagctggaagctgaatctcaatctactagtaacaaggtatggaacttcttcaatgcttctgccagttcatttgacaaagaaattgagtat |
212 |
Q |
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| T |
14310817 |
ttccaaatctaagctggaagctgaatctcaatctactactaacaaggtatggaacttcttcaatgcttcttccagttcgtttgacaaagaaattgaaaca |
14310916 |
T |
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| Q |
213 |
aagatgcaagaagt |
226 |
Q |
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|||||||||||||| |
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| T |
14310917 |
aagatgcaagaagt |
14310930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 14295620 - 14295831
Alignment:
| Q |
15 |
aagcagatcagaaatccaaacgtgagagcatggcttgatgctgtcaaagatgctgtgttagatgcagaggatctcttggaagaaattgactacgaagttt |
114 |
Q |
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|||||||||||||||| | | |||| ||||||||| |||||||||||||||| |||||| || ||||| ||| | || || ||||||||| ||| | |
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| T |
14295620 |
aagcagatcagaaatcaacaagtgaaagcatggctcgatgctgtcaaagatgttgtgtttgaagcagaagatttattagatgaaattgacattcaagcct |
14295719 |
T |
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| Q |
115 |
ccaaatgcaagctggaagctgaatctcaatctactagtaacaaggtatggaacttcttcaatgcttctgccagttcatttgacaaagaaattgagtataa |
214 |
Q |
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| T |
14295720 |
ttcaatgcaaactcgaaggtgaatctcaatccagtcctaacaaggtatggagttttttgaatgtttctgcaaattcatttgacaaagaaattgaatcaaa |
14295819 |
T |
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| Q |
215 |
gatgcaagaagt |
226 |
Q |
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|||||||||||| |
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| T |
14295820 |
gatgcaagaagt |
14295831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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