View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_66 (Length: 235)
Name: NF15423_high_66
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7804523 - 7804304
Alignment:
| Q |
1 |
caacaaaattctatgaatcgcatataatcatatgacaatatcaatcctttcnnnnnnnnttgtcaaaattatgcatgcatacacatacattctgctataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804523 |
caacaaaattctatgaatcgcatataatcatatgataatatcaatcctttcaaaaaaaattgtcaaaattatgcatgcatacacatacattctgctataa |
7804424 |
T |
|
| Q |
101 |
cagacaagcattcagttaaagtattggtgactcgagtttagcattatataccatgccatatgttcaaagaaactttgtggatctaatagcacttatgata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7804423 |
cagacaagcattcagttaaagtattggtgactcgagtttagcattatataccatgccatatgttcaaagaaactttgtggatctaatagcacttatgata |
7804324 |
T |
|
| Q |
201 |
tgtaaaaaagctaaaagagg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
7804323 |
tgtaaaaaagctaaaagagg |
7804304 |
T |
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