View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_high_68 (Length: 227)
Name: NF15423_high_68
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_high_68 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34984925 - 34985151
Alignment:
| Q |
1 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34984925 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
34985024 |
T |
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| Q |
101 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985025 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaag |
34985124 |
T |
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| Q |
201 |
ataagtccaactaaactagttgaatta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34985125 |
ataagtccaactaaactagttgaatta |
34985151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27543668 - 27543853
Alignment:
| Q |
1 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
100 |
Q |
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||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
27543668 |
ttctcgatgatattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagcttcaaactttacc |
27543767 |
T |
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| Q |
101 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggaca |
186 |
Q |
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| T |
27543768 |
tagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggaca |
27543853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 27542709 - 27542498
Alignment:
| Q |
13 |
ttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgattt |
112 |
Q |
| |
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||||| |||||||||||| ||| | ||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||| |
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| T |
27542709 |
ttgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaataggttggttgaagttggagaattttaaactttacctagttttgattt |
27542610 |
T |
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| Q |
113 |
gtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaact |
212 |
Q |
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|||||||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
27542609 |
gtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagattgaagcttttcggaacatggcattgattaagataagtccaact |
27542510 |
T |
|
| Q |
213 |
aaactagttgaa |
224 |
Q |
| |
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|||||||||||| |
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| T |
27542509 |
aaactagttgaa |
27542498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27581612 - 27581388
Alignment:
| Q |
1 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
100 |
Q |
| |
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||||| ||||| |||||||||||||||||||||| | ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
27581612 |
ttctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagcttcaaactttacc |
27581513 |
T |
|
| Q |
101 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaag |
200 |
Q |
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||||||||||||||| ||| |||||| ||||||| ||||||||||| | || ||||||||| |||||||||| || |||||| ||||||| ||||| |
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| T |
27581512 |
tagttttgatttgtg--aaaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatggcattggttaag |
27581415 |
T |
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| Q |
201 |
ataagtccaactaaactagttgaatta |
227 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
27581414 |
ataattccaactaaactagttgaatta |
27581388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27582992 - 27583220
Alignment:
| Q |
1 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
100 |
Q |
| |
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|||||||| || || ||||||||||||||||||| | ||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
27582992 |
ttctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagcttcaaactttacc |
27583091 |
T |
|
| Q |
101 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggca--ttgatta |
198 |
Q |
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||||||| |||||||||||||||||||| ||||||| ||||||||| | |||| |||||||||| ||||||||||||||| |||| |||| ||||||| |
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| T |
27583092 |
tagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacatggcatgttgatta |
27583191 |
T |
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| Q |
199 |
agataagtccaactaaactagttgaatta |
227 |
Q |
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| ||| || |||||||||||| ||||||| |
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| T |
27583192 |
atatatgttcaactaaactagatgaatta |
27583220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34992880 - 34993103
Alignment:
| Q |
1 |
ttctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacc |
100 |
Q |
| |
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|||||||| || |||||||||||||||||||| | ||||||||| ||||| ||||| |||||||| |||||||||||||||| |||||||| | || |
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| T |
34992880 |
ttctcgataatattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttcaaacactgcc |
34992979 |
T |
|
| Q |
101 |
tagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaag |
200 |
Q |
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||||||||||| |||||||| |||| || |||||| |||| ||| || |||| |||||||||||||||||||| ||| ||||| | ||||||||||||| |
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| T |
34992980 |
tagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggcattgattaag |
34993079 |
T |
|
| Q |
201 |
ataagtccaactaaactagttgaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
34993080 |
ataagtccaactaaactagttgaa |
34993103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 34980490 - 34980704
Alignment:
| Q |
13 |
ttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgattt |
112 |
Q |
| |
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|||||||||||||||||||| | ||||||||| | ||| | | ||||||||| |||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
34980490 |
ttgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattt |
34980589 |
T |
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| Q |
113 |
gtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaact |
212 |
Q |
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| T |
34980590 |
gtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaact |
34980689 |
T |
|
| Q |
213 |
aaactagttgaatta |
227 |
Q |
| |
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||||||||||||||| |
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| T |
34980690 |
aaactagttgaatta |
34980704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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