View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_high_9 (Length: 678)

Name: NF15423_high_9
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_high_9
NF15423_high_9
[»] chr8 (10 HSPs)
chr8 (324-671)||(29415036-29415381)
chr8 (19-284)||(29414769-29415033)
chr8 (270-465)||(24569633-24569830)
chr8 (276-366)||(18882629-18882720)
chr8 (269-390)||(12565226-12565347)
chr8 (270-398)||(28310515-28310644)
chr8 (270-400)||(12657238-12657369)
chr8 (271-371)||(25597448-25597547)
chr8 (268-391)||(31014586-31014703)
chr8 (309-374)||(28317910-28317975)
[»] chr2 (6 HSPs)
chr2 (240-451)||(32620132-32620345)
chr2 (271-400)||(31399654-31399784)
chr2 (572-621)||(12529845-12529894)
chr2 (270-372)||(36357525-36357628)
chr2 (270-425)||(27748512-27748668)
chr2 (572-605)||(32620455-32620488)
[»] chr5 (7 HSPs)
chr5 (270-396)||(8365203-8365330)
chr5 (268-396)||(18750985-18751114)
chr5 (271-399)||(18043607-18043736)
chr5 (342-428)||(26502456-26502543)
chr5 (249-396)||(19324191-19324338)
chr5 (345-399)||(12822425-12822479)
chr5 (572-605)||(26270475-26270508)
[»] chr1 (12 HSPs)
chr1 (270-399)||(25534193-25534323)
chr1 (240-411)||(15857010-15857184)
chr1 (268-399)||(10825359-10825491)
chr1 (271-385)||(27451365-27451480)
chr1 (270-374)||(13221330-13221434)
chr1 (344-397)||(13202375-13202428)
chr1 (240-366)||(36760814-36760942)
chr1 (576-605)||(15858674-15858703)
chr1 (240-366)||(36760031-36760159)
chr1 (240-366)||(36761597-36761725)
chr1 (240-366)||(36766594-36766722)
chr1 (576-605)||(36977112-36977141)
[»] chr3 (5 HSPs)
chr3 (270-399)||(25781207-25781337)
chr3 (297-451)||(32466378-32466533)
chr3 (286-399)||(25779921-25780035)
chr3 (270-399)||(6878803-6878933)
chr3 (340-379)||(26335738-26335778)
[»] chr6 (6 HSPs)
chr6 (238-384)||(26296994-26297143)
chr6 (297-387)||(33651372-33651462)
chr6 (286-399)||(9228437-9228551)
chr6 (286-446)||(2360408-2360574)
chr6 (574-605)||(24319866-24319897)
chr6 (577-605)||(13174887-13174915)
[»] chr7 (5 HSPs)
chr7 (287-399)||(18775343-18775456)
chr7 (287-391)||(5779817-5779923)
chr7 (344-427)||(1279570-1279654)
chr7 (327-374)||(16225113-16225160)
chr7 (326-370)||(669795-669839)
[»] chr4 (3 HSPs)
chr4 (270-399)||(12462092-12462222)
chr4 (567-611)||(19084694-19084738)
chr4 (272-379)||(20595093-20595201)
[»] scaffold1122 (1 HSPs)
scaffold1122 (345-399)||(1583-1637)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 324 - 671
Target Start/End: Original strand, 29415036 - 29415381
Alignment:
Q  324 tctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatctt 423  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29415036 tctaaagactctaacttcgtctatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaaacaagtagctctatcttgtatatctt 29415135  T
Q  424 accagggggaagaataaaatttataatgaaatatttggaaaaaataaccagggacaacgactcgggcagtatcttatgtgccacatgtttctatgttcta 523  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29415136 accagggggaagaataaaatttataatgaaatatttgaaaaaaataaccagggacaacgactcgggcagtatcttatgcgccacatgtttctatgttcta 29415235  T
Q  524 tcagattccatatgtatgtcacacttcctagggcttcattcacgcaccaagacttttgcatataaaaattaaatagatctcataaaatctctaaataata 623  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  29415236 tcaaattccatatgtatgtcacactccctagggcttcattcacgcactaagac--ttgcatataaaaattaaatagatatcataaaatctctaaataata 29415333  T
Q  624 aaagcctctaattatattgattcaacaaacaaattgaggttcatctca 671  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29415334 aaagcctctaattatattgatccaacaaacaaattgaggttcatctca 29415381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 29414769 - 29415033
Alignment:
Q  19 gtattcccctcacagactcaaggtatttgctgaagtgaaaatactgagtttgttctgattgtatcatagttggagggagacaagggcttggtaagtggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29414769 gtattcccctcacagactcaaggtatttgctgaagtgaaaatactgagtttgttctgattgtatcatagttggagggagacaaggccttggtaagtggat 29414868  T
Q  119 caacaagttgatcatgagcaggaacatgaagaatattgagttgattgatcaacactccttttctcctaaaaggttatacgcgctataaggatgtaggatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||    
T  29414869 caacaagttgatcatgagcaggaacatgaagaatattgagttgattgatcaatactccttttctcataaaaggttatacgcgctctaaggatgcaggatc 29414968  T
Q  219 gtcaattttat-gggtcatatatatgcctacgtaaggttggttaagtagagccttactctctcaaag 284  Q
    ||||||||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  29414969 gtcaattttatagggtc--acatatgcctacgtaaggttggttaagtagagccttactctctcaaag 29415033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 270 - 465
Target Start/End: Complemental strand, 24569830 - 24569633
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    ||||||||||||||| |||| |||||| |||||||||| |||| |||||| ||| ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  24569830 cttactctctcaaaggtaatagaaacataaaagaattggtatttctaaattgtcatctaaaggctccaacttcgtctatgaatcttataagtacatcaca 24569731  T
Q  369 tactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatcttacc-agggggaagaataaaatttataatgaaatatttggaaaa 465  Q
    ||   |||||||||||| ||||| | |||||  ||||| |||| || | || |||||| ||| ||||||||||| ||||||||| ||  |||||||||    
T  24569730 tagattttcttaccttaatagttctgcaaactggtagccctatgtcatctaccttaccaaggtggaagaataaagtttataatgcaacgtttggaaaa 24569633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 18882629 - 18882720
Alignment:
Q  276 ctctcaaagctaattgaaacaaaaa-gaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatca 366  Q
    ||||||||| ||||||||||||||| |||||  |||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  18882629 ctctcaaaggtaattgaaacaaaaaagaattattattcccaaattgtcatctaaaggcttcaacttcatctatgaatcttataagtacatca 18882720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 12565226 - 12565347
Alignment:
Q  269 ccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcac 367  Q
    ||||||||||||||||  |||||||||| ||||||| || |||| |||||| ||| | ||||||||| | | || ||||||||||||||||||||| |||    
T  12565226 ccttactctctcaaaggcaattgaaacataaaagaaatggtattactaaattgtcatataaaggctcca-cgtcgtctatgaatcttagaagtacaccac 12565324  T
Q  368 atactctttcttaccttagtagt 390  Q
    |||| | ||||  ||||||||||    
T  12565325 atacccattctatccttagtagt 12565347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 398
Target Start/End: Original strand, 28310515 - 28310644
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||| |||||||||| ||||||||||| |||||| ||| ||||||||||  ||| | ||||||||  |||||  | ||| |||| |||||||||||||||    
T  28310515 cttaatctctcaaaggtaattgaaacataaaagatttggtattcctaaaatgtcatttaaaggctacaactttgtttataaatcatagaagtacatcaca 28310614  T
Q  369 tactctttcttaccttagtagttttacaaa 398  Q
    |  ||||||||| | |||||||| ||||||    
T  28310615 ttttctttcttatcctagtagttctacaaa 28310644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 12657369 - 12657238
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||| | || ||||||||||| ||||||||| | ||| |||||| ||| | |||||| || |  ||| ||||||||| |||||||| ||| |||    
T  12657369 cttactctcttagaggtaattgaaacataaaagaattaaaatttctaaattgtcatttaaagggtccagattcgtctatgaattttagaagttcataaca 12657270  T
Q  369 tactctttcttaccttagtagttttacaaaca 400  Q
    || ||| | |||||||||||||| ||||||||    
T  12657269 tattctctattaccttagtagttctacaaaca 12657238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 25597547 - 25597448
Alignment:
Q  271 ttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacat 369  Q
    ||||||||||| |  ||||||||||| |||||| |||| |||||||||| ||| ||| ||| ||| |||||| |||  |||||||||||||||||| |||    
T  25597547 ttactctctcagacgtaattgaaacataaaagagttgagattcctaaattgtcatcttaagactccaacttcgtct--gaatcttagaagtacatcgcat 25597450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 31014586 - 31014703
Alignment:
Q  268 gccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatca 366  Q
    ||||||| |||||| |  ||||||||||| ||||||||||| ||| |||||| ||| ||||||||||| ||||||||       |||||||||| |||||    
T  31014586 gccttaccctctcagacgtaattgaaacataaaagaattgaaatttctaaattgtcatctaaaggctcaaacttcat-------tcttagaagttcatca 31014678  T
Q  367 catactctttcttaccttagtagtt 391  Q
    |||||  |||||||| ||| |||||    
T  31014679 cataccttttcttacattaatagtt 31014703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 28317910 - 28317975
Alignment:
Q  309 attcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatc-acatactct 374  Q
    |||||||||| ||| ||||||||||||  ||| |||||||||||||| ||||||||| |||||||||    
T  28317910 attcctaaattgtcatctaaaggctctc-cttaatctatgaatcttataagtacatcaacatactct 28317975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 240 - 451
Target Start/End: Original strand, 32620132 - 32620345
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaac 338  Q
    |||||||||||||||||| |  ||| | |||||||||||| |||  |||||||| || |||||||||| |||||||||||  || ||||||||||  |||    
T  32620132 tatgcctacgtaaggttgttagagtggggccttactctcttaaaattaattgaaccataaaagaattggtattcctaaattatcttctaaaggcttcaac 32620231  T
Q  339 ttcatctatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatcttacc-agggggaagaa 437  Q
    ||| |||||||| |||| ||||||||||||||| |||||| |||||||||||| | |||||| ||||| |||| | || || ||| || ||||| || ||    
T  32620232 ttcgtctatgaaccttaaaagtacatcacataccctttctaaccttagtagttctgcaaacaggtagccctatgtagtctacctttccgaggggaaataa 32620331  T
Q  438 taaaatttataatg 451  Q
    ||||||||||||||    
T  32620332 taaaatttataatg 32620345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 31399784 - 31399654
Alignment:
Q  271 ttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacat 369  Q
    ||||||| ||| || ||||||||| | |||||||||| |||| |||||| ||   |||||||||||||||| || ||||||||||||||||||||||| |    
T  31399784 ttactctatcagaggtaattgaaatataaaagaattggtatttctaaattgttagctaaaggctctaactttatttatgaatcttagaagtacatcacct 31399685  T
Q  370 actctttcttaccttagtagttttacaaaca 400  Q
    || |||||  |||||||||||||||||||||    
T  31399684 accctttccgaccttagtagttttacaaaca 31399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 12529845 - 12529894
Alignment:
Q  572 aagacttttgcatataaaaattaaatagatctcataaaatctctaaataa 621  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12529845 aagacttttgcatataaaaattaaatagatctcataaaataactaaataa 12529894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 270 - 372
Target Start/End: Original strand, 36357525 - 36357628
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||| | || ||||||||||| |||||||||   |||||||||| ||| | ||||||||| |||||  |||||||||||||||||  ||||| |    
T  36357525 cttactctcttagaggtaattgaaacataaaagaattaggattcctaaattgtcatataaaggctccaactttgtctatgaatcttagaaggtcatcata 36357624  T
Q  369 tact 372  Q
    ||||    
T  36357625 tact 36357628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 27748668 - 27748512
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||||| || ||||  ||||| ||||||||||  ||| |||||| | | |||||| |||| |||||| | ||||||||||||||||  || |||    
T  27748668 cttactctctcagaggtaatccaaacataaaagaattgggatttctaaattgacatctaaatgctccaacttcttttatgaatcttagaagtttataaca 27748569  T
Q  369 tactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatcttac 425  Q
    || ||| | |||||||| | ||| |||||||| | | | ||||||||| ||| ||||    
T  27748568 tattctctattaccttaattgttctacaaacaggcaaccctatctcgtctatattac 27748512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 605
Target Start/End: Original strand, 32620455 - 32620488
Alignment:
Q  572 aagacttttgcatataaaaattaaatagatctca 605  Q
    ||||||||||||||||||||||||||| ||||||    
T  32620455 aagacttttgcatataaaaattaaataaatctca 32620488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 396
Target Start/End: Complemental strand, 8365330 - 8365203
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||| | || ||||||||||| ||||||||||| |||| ||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  8365330 cttactctcttataggtaattgaaacataaaagaattgagattcttaaattgtcatctaaaggctccaacttcatctatgaatcttagaagttcatcaca 8365231  T
Q  369 tactctttcttaccttagtagttttaca 396  Q
    |||| | |||||||||||||||| ||||    
T  8365230 tactttgtcttaccttagtagttctaca 8365203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 18750985 - 18751114
Alignment:
Q  268 gccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatca 366  Q
    |||||||||||| | || ||||||||||| |||||||| |  ||| ||||||  || ||||||||||| |||||| |||||| ||||||||||| |||||    
T  18750985 gccttactctcttagaggtaattgaaacataaaagaatcgggatttctaaattttcatctaaaggctccaacttcgtctatgcatcttagaagttcatca 18751084  T
Q  367 catactctttcttaccttagtagttttaca 396  Q
    |||||||| |||||||||||||||||||||    
T  18751085 catactctctcttaccttagtagttttaca 18751114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 18043607 - 18043736
Alignment:
Q  271 ttactctctcaaagctaattgaaacaaaaag-aattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacat 369  Q
    ||||| ||||| |||||||||||||| |||| || |  |||||||||||  || || |||||||| || |||||||||||||||||||||||||||||||    
T  18043607 ttactatctcatagctaattgaaacataaaggaactagtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacat 18043706  T
Q  370 actctttcttaccttagtagttttacaaac 399  Q
    ||  |||||||| | | |||||||||||||    
T  18043707 accatttcttacttcaatagttttacaaac 18043736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 428
Target Start/End: Original strand, 26502456 - 26502543
Alignment:
Q  342 atctatgaatcttagaagtacatca-catactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatcttaccag 428  Q
    |||| ||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||| ||| |||| |||| |||| ||||||    
T  26502456 atctgtgaatcttagaagtatatcaacataccctatcttaccttagtagttctacaaacaagaagccctatgtcgtctatcataccag 26502543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 19324338 - 19324191
Alignment:
Q  249 gtaaggttggttaagtagagccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctat 347  Q
    ||||||||| |  ||| |||||||||||||||| || ||| ||||||| |||||||||| |||| |||||| ||| ||||||||| | | |||| |||||    
T  19324338 gtaaggttgttagagtggagccttactctctcagaggtaactgaaacataaaagaattggtatttctaaattgtcttctaaaggccccaccttcgtctat 19324239  T
Q  348 gaatcttagaagtacatcacatactctttcttaccttagtagttttaca 396  Q
    || | |||  |||||| ||| |||| |||||| ||||| ||||| ||||    
T  19324238 gatttttattagtacaccac-tactttttctttccttaatagttctaca 19324191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 12822479 - 12822425
Alignment:
Q  345 tatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaaac 399  Q
    |||||||||||||||| |||||| ||||||||||||| | ||||| |||| ||||    
T  12822479 tatgaatcttagaagttcatcacgtactctttcttacttcagtagctttataaac 12822425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 605
Target Start/End: Original strand, 26270475 - 26270508
Alignment:
Q  572 aagacttttgcatataaaaattaaatagatctca 605  Q
    |||| |||||||||||||||||||||||||||||    
T  26270475 aagatttttgcatataaaaattaaatagatctca 26270508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 25534323 - 25534193
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||||| || ||||||||||| ||||||||||  |||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||| |||    
T  25534323 cttactctctcagagataattgaaacataaaagaattgggattcctaaattgtcatctaaaggctctaacttcgtctatgaatcttagaagttcataaca 25534224  T
Q  369 tactctttcttaccttagtagttttacaaac 399  Q
    |||||| | ||||||||||||  ||||||||    
T  25534223 tactctctattaccttagtagagttacaaac 25534193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 240 - 411
Target Start/End: Original strand, 15857010 - 15857184
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaac 338  Q
    |||||||| ||||||||| |  ||| |  |||||||||||||  | ||||||||||| ||||||||||| |||| ||||| ||| ||||||||||| |||    
T  15857010 tatgcctaggtaaggttgttagagtgggaccttactctctcagcgttaattgaaacataaaagaattgagattcttaaattgtcatctaaaggctccaac 15857109  T
Q  339 ttcatctatgaatcttagaagtacatcacatactctttct--taccttagtagttttacaaacaagtagctctat 411  Q
    ||| |||||||||||||||||||||||||| || ||||||  ||||||| ||||| ||||||||  |||||||||    
T  15857110 ttcgtctatgaatcttagaagtacatcacacaccctttcttataccttattagttctacaaacagatagctctat 15857184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 10825359 - 10825491
Alignment:
Q  268 gccttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatca 366  Q
    |||||| ||||| | |||||||||||||| ||||||||||  |||||||||| ||| ||||| ||||  |||||| |||||||||||||||||| ||| |    
T  10825359 gccttaatctcttagagctaattgaaacataaaagaattgggattcctaaattgtcatctaagggcttcaacttcgtctatgaatcttagaagttcataa 10825458  T
Q  367 catactctttcttaccttagtagttttacaaac 399  Q
    || ||||| |||||||||||||||| |||||||    
T  10825459 cacactctctcttaccttagtagttctacaaac 10825491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 385
Target Start/End: Complemental strand, 27451480 - 27451365
Alignment:
Q  271 ttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacat 369  Q
    ||||||||||| || ||||||||||| |||| | ||||||||||||||| ||| |||||| |||| |||||  |||| ||||||||||||||||||||||    
T  27451480 ttactctctcagaggtaattgaaacataaaacagttgatattcctaaattgtcatctaaaagctcaaactttgtctacgaatcttagaagtacatcacat 27451381  T
Q  370 actctttcttacctta 385  Q
    ||  ||||||| ||||    
T  27451380 accatttcttaactta 27451365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 13221434 - 13221330
Alignment:
Q  270 cttactctctcaaagctaattgaaacaaaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacat 369  Q
    |||||||||||||||  |||||||||| ||||||||   |||||||||| ||| ||||||| ||| |||||| |||||||||| || ||||  |||||||    
T  13221434 cttactctctcaaaggaaattgaaacacaaagaatttggattcctaaattgtcatctaaagtctccaacttcgtctatgaatcatataagtttatcacat 13221335  T
Q  370 actct 374  Q
    |||||    
T  13221334 actct 13221330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 13202428 - 13202375
Alignment:
Q  344 ctatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaa 397  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||    
T  13202428 ctatgaatcttagaagttcatcacatactctctcttaccttaatagttctacaa 13202375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 36760942 - 36760814
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaacaaaaagaa--ttgatattcctaaatcgtcgtctaaaggctctaa 337  Q
    ||||||| |||||||||  | |||||  | ||||||||||||||||||||| ||||| ||| ||  ||| || |||||||| ||| | |||| | || |     
T  36760942 tatgccttcgtaaggttattaaagtaaggtcttactctctcaaagctaattaaaacataaacaaagttggtactcctaaattgtcatttaaaagatccac 36760843  T
Q  338 cttcatctatgaatcttagaagtacatca 366  Q
    || | ||||||||||||||||||||||||    
T  36760842 ctacgtctatgaatcttagaagtacatca 36760814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Original strand, 15858674 - 15858703
Alignment:
Q  576 cttttgcatataaaaattaaatagatctca 605  Q
    ||||||||||||||||||||||||||||||    
T  15858674 cttttgcatataaaaattaaatagatctca 15858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 36760159 - 36760031
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaacaaaaagaa--ttgatattcctaaatcgtcgtctaaaggctctaa 337  Q
    ||||||| |||||||||  | |||||  | |||| |||||||||||||||| ||||| ||| ||  ||| || |||||||| ||| | |||| | || |     
T  36760159 tatgccttcgtaaggttattaaagtaaggtcttagtctctcaaagctaattaaaacataaacaaagttggtactcctaaattgtcatttaaatgatccac 36760060  T
Q  338 cttcatctatgaatcttagaagtacatca 366  Q
    || | ||||||||||||||||||||||||    
T  36760059 ctacgtctatgaatcttagaagtacatca 36760031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 36761725 - 36761597
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaacaaaaagaa--ttgatattcctaaatcgtcgtctaaaggctctaa 337  Q
    ||||||| |||||||||  | |||||  | |||| |||||||||||||||| ||||| ||| ||  ||| || |||||||| ||| | |||| | || |     
T  36761725 tatgccttcgtaaggttattaaagtaaggtcttagtctctcaaagctaattaaaacataaacaaagttggtactcctaaattgtcatttaaatgatccac 36761626  T
Q  338 cttcatctatgaatcttagaagtacatca 366  Q
    || | ||||||||||||||||||||||||    
T  36761625 ctacgtctatgaatcttagaagtacatca 36761597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 36766722 - 36766594
Alignment:
Q  240 tatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaacaaaaagaa--ttgatattcctaaatcgtcgtctaaaggctctaa 337  Q
    ||||||| |||||||||  | |||||  | |||| |||||||||||||||| ||||| ||| ||  ||| || |||||||| ||| | |||| | || |     
T  36766722 tatgccttcgtaaggttattaaagtaaggtcttagtctctcaaagctaattaaaacataaacaaagttggtactcctaaattgtcatttaaatgatccac 36766623  T
Q  338 cttcatctatgaatcttagaagtacatca 366  Q
    || | ||||||||||||||||||||||||    
T  36766622 ctacgtctatgaatcttagaagtacatca 36766594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 605
Target Start/End: Original strand, 36977112 - 36977141
Alignment:
Q  576 cttttgcatataaaaattaaatagatctca 605  Q
    ||||||||||||||||||||||||||||||    
T  36977112 cttttgcatataaaaattaaatagatctca 36977141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 25781337 - 25781207
Alignment:
Q  270 cttactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||||| || ||||||||||| ||||||||||  |||||||||| ||| ||||||||||| |||||  |||||||||||||||||| | || ||    
T  25781337 cttactctctcagagttaattgaaacataaaagaattggaattcctaaattgtcatctaaaggctccaactttgtctatgaatcttagaagttcctcgca 25781238  T
Q  369 tactctttcttaccttagtagttttacaaac 399  Q
    |||||| ||||||| |||||||| |||||||    
T  25781237 tactctctcttaccatagtagttctacaaac 25781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 297 - 451
Target Start/End: Complemental strand, 32466533 - 32466378
Alignment:
Q  297 aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttaccttagtagttttaca 396  Q
    ||||| ||||| ||||||||||  || ||||||||||| |||||| | |||||||||||||| |||||||||||   ||||||||||||| |||| ||||    
T  32466533 aaaagtattgagattcctaaattatcatctaaaggctccaacttcgtttatgaatcttagaaatacatcacatatcatttcttaccttagcagttctaca 32466434  T
Q  397 aacaagtagctctatctcgtatatcttacc-agggggaagaataaaatttataatg 451  Q
    |||   |||| |||| |||| ||||||||| ||||| || |||||| |||||||||    
T  32466433 aacggatagccctatgtcgtctatcttaccaaggggaaataataaagtttataatg 32466378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 399
Target Start/End: Complemental strand, 25780035 - 25779921
Alignment:
Q  286 taattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttacctt 384  Q
    ||||||||||| ||||||||||  |||||||||| ||| ||||||||||| |||||||| |||||||| || ||||    |||||||||| ||||||| |    
T  25780035 taattgaaacataaaagaattgggattcctaaattgtcatctaaaggctccaacttcatttatgaatcgtacaagtttcgcacatactctctcttaccat 25779936  T
Q  385 agtagttttacaaac 399  Q
    ||||||| |||||||    
T  25779935 agtagttctacaaac 25779921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 6878933 - 6878803
Alignment:
Q  270 cttactctctcaaagctaattgaaacaaaa-agaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||| ||| || ||||||||||| || ||||||   |||| ||||| ||| ||||||||||| ||||||   | ||||||||||||||||| ||||    
T  6878933 cttactctttcagagataattgaaacacaatagaattaggattcttaaattgtcatctaaaggctccaacttctcttgtgaatcttagaagtacaccaca 6878834  T
Q  369 tactctttcttaccttagtagttttacaaac 399  Q
    |||  | |||||||||||||||| |||||||    
T  6878833 taccatctcttaccttagtagttctacaaac 6878803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 26335738 - 26335778
Alignment:
Q  340 tcatctatgaatcttagaagtacatc-acatactctttctt 379  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  26335738 tcatctatgaatcttagaagtacatcaacatactctctctt 26335778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 26296994 - 26297143
Alignment:
Q  238 tatatgcctacgtaaggttggttaagtagagccttactctctcaaagctaattgaaaca-aaaagaattg--atattcctaaatcgtcgtctaaaggctc 334  Q
    |||||||||| ||||||||| |  ||  | |||||||||||| | || ||||||||||| ||||||| ||  ||||||||||||  || ||||||  |||    
T  26296994 tatatgcctatgtaaggttgttagagaggtgccttactctcttagaggtaattgaaacacaaaagaactgtgatattcctaaattttcatctaaacactc 26297093  T
Q  335 taacttcatctatgaatcttagaagtacatcacatactctttcttacctt 384  Q
     |||||| |||||||||||||||||| |||||||| | ||||||||||||    
T  26297094 caacttcgtctatgaatcttagaagtgcatcacatgccctttcttacctt 26297143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 33651462 - 33651372
Alignment:
Q  297 aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttaccttagt 387  Q
    ||||||||||| |||||||||| ||| |||||| | | ||||||| | |||||||||||||||| ||| |||||||||||||||| |||||    
T  33651462 aaaagaattgaaattcctaaattgtcatctaaaagatttaacttcgtttatgaatcttagaagttcataacatactctttcttactttagt 33651372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 399
Target Start/End: Original strand, 9228437 - 9228551
Alignment:
Q  286 taattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttacctt 384  Q
    ||||||||||| |||||| |||| || | ||||| ||| ||||||| ||| |||||| ||||| ||||||| |||||||||||||||  |||||| ||||    
T  9228437 taattgaaacataaaagagttgagatccataaattgtcatctaaagactcaaacttcgtctataaatcttaaaagtacatcacataccttttctttcctt 9228536  T
Q  385 agtagttttacaaac 399  Q
    | ||||| |||||||    
T  9228537 aatagttctacaaac 9228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 446
Target Start/End: Complemental strand, 2360574 - 2360408
Alignment:
Q  286 taattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttacctt 384  Q
    ||||||||||| |||||||||  | ||||||||| ||| ||||||  ||  |||||| |||||||||||||||| | |||||| |||  |||||||||||    
T  2360574 taattgaaacataaaagaattattcttcctaaattgtcatctaaaaacttcaacttcgtctatgaatcttagaaattcatcacgtacattttcttacctt 2360475  T
Q  385 ---agtagttttacaaac--aagtagctctatctcgtatatcttaccagggggaagaataaaattta 446  Q
       ||||||| |||| ||   |||| | ||||||||| || |||| || || |||||||||||||||    
T  2360474 ataagtagttctacatacgagagtaaccctatctcgtctaccttatcaaggagaagaataaaattta 2360408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 605
Target Start/End: Original strand, 24319866 - 24319897
Alignment:
Q  574 gacttttgcatataaaaattaaatagatctca 605  Q
    ||||||||||||||||||||||||||||||||    
T  24319866 gacttttgcatataaaaattaaatagatctca 24319897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 605
Target Start/End: Original strand, 13174887 - 13174915
Alignment:
Q  577 ttttgcatataaaaattaaatagatctca 605  Q
    |||||||||||||||||||||||||||||    
T  13174887 ttttgcatataaaaattaaatagatctca 13174915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 18775456 - 18775343
Alignment:
Q  287 aattgaaacaaaaag-aattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacatactctttcttacctta 385  Q
    |||||||||| |||| ||||| | ||| |||||  || |||||||  | ||||||||||||||||||| | ||||||||| ||||| |||||||||||||    
T  18775456 aattgaaacataaagtaattggttttcttaaattatcatctaaagaatttaacttcatctatgaatctaataagtacatcgcataccctttcttacctta 18775357  T
Q  386 gtagttttacaaac 399  Q
    |||||| |||||||    
T  18775356 gtagttctacaaac 18775343  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 5779817 - 5779923
Alignment:
Q  287 aattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacat--cacatactctttcttacct 383  Q
    |||||||||| ||||||||| | |||||||||| ||  |||||| |||| ||||| ||||||||||||||||||| |||  |||||| ||| ||||||||    
T  5779817 aattgaaacataaaagaatt-agattcctaaattgttatctaaaagctcaaacttgatctatgaatcttagaagttcatcacacatattctctcttacct 5779915  T
Q  384 tagtagtt 391  Q
    ||||||||    
T  5779916 tagtagtt 5779923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 1279570 - 1279654
Alignment:
Q  344 ctatgaatcttagaagtacatc-acatactctttcttaccttagtagttttacaaacaagtagctctatctcgtatatcttacca 427  Q
    |||||||||||| ||||||||| |||||| || |||||||||| ||||| |||||||  ||| |||||| |||| || |||||||    
T  1279570 ctatgaatcttataagtacatcaacataccctatcttaccttattagttctacaaacgggtaactctatatcgtttaccttacca 1279654  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 16225160 - 16225113
Alignment:
Q  327 aaaggctctaacttcatctatgaatcttagaagtacatcacatactct 374  Q
    |||||||| || ||||| |||||||||||||||| |||||||||||||    
T  16225160 aaaggctccaatttcatatatgaatcttagaagttcatcacatactct 16225113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 669839 - 669795
Alignment:
Q  326 taaaggctctaacttcatctatgaatcttagaagtacatcacata 370  Q
    ||||||||| | |||| ||||||||||||||||||||| ||||||    
T  669839 taaaggctccaccttcgtctatgaatcttagaagtacaccacata 669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 12462222 - 12462092
Alignment:
Q  270 cttactctctcaaagctaattgaaacaaaaag-aattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcaca 368  Q
    |||||||||||| || ||||||||||| |||  ||||   | ||||||||  || |||||| |||| |||||| |||||||||||||||||| ||| |||    
T  12462222 cttactctctcagaggtaattgaaacataaattaattaggactcctaaattatcatctaaatgctccaacttcgtctatgaatcttagaagttcataaca 12462123  T
Q  369 tactctttcttaccttagtagttttacaaac 399  Q
    || ||| | ||| ||||||| || |||||||    
T  12462122 tattctctattatcttagtaattctacaaac 12462092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 611
Target Start/End: Complemental strand, 19084738 - 19084694
Alignment:
Q  567 gcaccaagacttttgcatataaaaattaaatagatctcataaaat 611  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||    
T  19084738 gcactaagacttttgcatatgaaaattaaataaatctcataaaat 19084694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 20595093 - 20595201
Alignment:
Q  272 tactctctcaaagctaattgaaaca-aaaagaattgatattcctaaatcgtcgtctaaaggctctaacttcatctatgaatcttagaagtacatcacata 370  Q
    ||||||||||||| ||||| ||||| ||||||||||  |||| ||||| ||| |||||| |||| ||  || | ||||||||||| |||| ||| ||||     
T  20595093 tactctctcaaaggtaatttaaacataaaagaattgggattcttaaattgtcatctaaaagctccaaagtcgtatatgaatcttataagttcataacatg 20595192  T
Q  371 ctctttctt 379  Q
    |||| ||||    
T  20595193 ctctctctt 20595201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1122 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 1583 - 1637
Alignment:
Q  345 tatgaatcttagaagtacatcacatactctttcttaccttagtagttttacaaac 399  Q
    |||||||||||||||| |||||| ||||||||||||| | ||||| |||| ||||    
T  1583 tatgaatcttagaagttcatcacgtactctttcttacttcagtagctttataaac 1637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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