View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15423_low_1 (Length: 1120)

Name: NF15423_low_1
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15423_low_1
NF15423_low_1
[»] chr2 (21 HSPs)
chr2 (1-1100)||(12266897-12267998)
chr2 (884-973)||(735993-736082)
chr2 (884-964)||(4026963-4027043)
chr2 (889-1034)||(13839760-13839904)
chr2 (884-970)||(33321280-33321366)
chr2 (886-972)||(39070843-39070929)
chr2 (884-973)||(11777013-11777102)
chr2 (884-973)||(36501483-36501572)
chr2 (884-973)||(38216048-38216137)
chr2 (884-964)||(8832495-8832575)
chr2 (884-970)||(38471759-38471845)
chr2 (897-973)||(12223881-12223957)
chr2 (887-971)||(39592280-39592364)
chr2 (884-950)||(2401590-2401656)
chr2 (889-943)||(10988220-10988274)
chr2 (884-950)||(17546476-17546542)
chr2 (884-950)||(22898325-22898391)
chr2 (884-958)||(37409687-37409761)
chr2 (884-973)||(887441-887530)
chr2 (884-921)||(23756408-23756445)
chr2 (896-949)||(30995880-30995933)
[»] chr1 (26 HSPs)
chr1 (886-1041)||(50919448-50919603)
chr1 (884-1034)||(46500968-46501120)
chr1 (884-973)||(47413401-47413490)
chr1 (884-973)||(3069822-3069911)
chr1 (884-973)||(6337724-6337813)
chr1 (884-973)||(41196678-41196767)
chr1 (884-969)||(41576363-41576448)
chr1 (884-973)||(48819328-48819417)
chr1 (886-973)||(15515317-15515404)
chr1 (894-972)||(49971281-49971360)
chr1 (884-973)||(41003416-41003505)
chr1 (884-973)||(37329380-37329469)
chr1 (884-950)||(14461009-14461075)
chr1 (884-970)||(26988180-26988266)
chr1 (884-973)||(28690033-28690122)
chr1 (884-972)||(35282562-35282650)
chr1 (884-972)||(42591412-42591500)
chr1 (889-972)||(31378724-31378807)
chr1 (884-973)||(4068144-4068233)
chr1 (884-973)||(16888934-16889022)
chr1 (884-973)||(22593375-22593464)
chr1 (886-973)||(1005369-1005456)
chr1 (886-964)||(35590168-35590246)
chr1 (884-973)||(45267494-45267584)
chr1 (884-945)||(19395831-19395892)
chr1 (884-969)||(37712100-37712185)
[»] chr5 (29 HSPs)
chr5 (884-970)||(27805947-27806033)
chr5 (884-973)||(28357170-28357259)
chr5 (884-973)||(43319032-43319121)
chr5 (884-972)||(41419531-41419619)
chr5 (884-973)||(28625509-28625598)
chr5 (884-972)||(2878645-2878732)
chr5 (884-973)||(38461248-38461339)
chr5 (884-972)||(13625488-13625577)
chr5 (884-973)||(29659089-29659178)
chr5 (884-971)||(40452445-40452533)
chr5 (884-970)||(19840058-19840144)
chr5 (884-973)||(11991334-11991422)
chr5 (884-973)||(13060570-13060659)
chr5 (884-973)||(17657271-17657360)
chr5 (884-973)||(23087747-23087836)
chr5 (884-973)||(24030244-24030332)
chr5 (884-925)||(38498645-38498686)
chr5 (887-964)||(39154732-39154809)
chr5 (884-964)||(1576668-1576748)
chr5 (884-964)||(1608067-1608147)
chr5 (884-964)||(6144776-6144856)
chr5 (890-973)||(12467293-12467377)
chr5 (890-973)||(12986988-12987071)
chr5 (884-973)||(40697030-40697124)
chr5 (884-926)||(43268604-43268646)
chr5 (884-973)||(1868875-1868964)
chr5 (884-973)||(28357381-28357470)
chr5 (884-973)||(29418720-29418809)
chr5 (884-973)||(29922157-29922246)
[»] chr4 (35 HSPs)
chr4 (886-972)||(8601231-8601317)
chr4 (886-966)||(2405223-2405303)
chr4 (884-973)||(488352-488441)
chr4 (884-973)||(896999-897088)
chr4 (884-950)||(42617198-42617264)
chr4 (884-973)||(10046261-10046350)
chr4 (884-973)||(17222858-17222947)
chr4 (884-973)||(36255004-36255093)
chr4 (884-973)||(19725322-19725411)
chr4 (884-973)||(23335671-23335760)
chr4 (884-973)||(29877668-29877757)
chr4 (884-973)||(35010240-35010329)
chr4 (884-952)||(9319098-9319166)
chr4 (884-972)||(46704238-46704326)
chr4 (886-952)||(4398176-4398242)
chr4 (884-950)||(15184598-15184664)
chr4 (884-950)||(22273832-22273898)
chr4 (884-970)||(32628810-32628896)
chr4 (884-973)||(52700511-52700601)
chr4 (884-973)||(28074394-28074482)
chr4 (884-972)||(825712-825800)
chr4 (920-972)||(2494404-2494456)
chr4 (884-973)||(12495612-12495703)
chr4 (913-973)||(21216325-21216385)
chr4 (888-972)||(48591396-48591480)
chr4 (884-973)||(11679095-11679184)
chr4 (884-973)||(11687374-11687463)
chr4 (884-950)||(38345790-38345856)
chr4 (884-973)||(43415256-43415346)
chr4 (884-942)||(48721880-48721938)
chr4 (884-973)||(18424246-18424334)
chr4 (887-964)||(36740942-36741019)
chr4 (896-973)||(39932734-39932811)
chr4 (884-973)||(42611837-42611924)
chr4 (884-973)||(55638049-55638138)
[»] chr7 (16 HSPs)
chr7 (889-965)||(18855243-18855319)
chr7 (884-973)||(14691267-14691356)
chr7 (892-972)||(43391751-43391831)
chr7 (883-973)||(23119887-23119977)
chr7 (884-973)||(22032791-22032880)
chr7 (884-973)||(47654382-47654471)
chr7 (884-972)||(8180559-8180647)
chr7 (884-950)||(14675928-14675994)
chr7 (888-965)||(16012735-16012812)
chr7 (884-973)||(20888603-20888692)
chr7 (888-973)||(29378674-29378759)
chr7 (884-973)||(30181579-30181668)
chr7 (884-972)||(48021616-48021703)
chr7 (884-950)||(23137131-23137197)
chr7 (884-918)||(27811429-27811463)
chr7 (884-973)||(43818846-43818936)
[»] chr6 (11 HSPs)
chr6 (884-971)||(21610017-21610104)
chr6 (884-971)||(8014819-8014906)
chr6 (893-945)||(715888-715940)
chr6 (884-948)||(9202367-9202431)
chr6 (884-972)||(10874014-10874102)
chr6 (932-973)||(5958357-5958398)
chr6 (884-973)||(34509941-34510029)
chr6 (887-969)||(13429488-13429571)
chr6 (884-947)||(32675857-32675920)
chr6 (884-950)||(32165229-32165295)
chr6 (884-973)||(2255763-2255852)
[»] chr3 (22 HSPs)
chr3 (890-973)||(10521183-10521266)
chr3 (884-1034)||(35583688-35583845)
chr3 (890-1025)||(10667373-10667510)
chr3 (884-950)||(37778185-37778251)
chr3 (884-973)||(42956147-42956236)
chr3 (922-1028)||(27769619-27769725)
chr3 (884-973)||(37243495-37243584)
chr3 (884-973)||(53218008-53218097)
chr3 (913-973)||(10448803-10448863)
chr3 (907-973)||(52421132-52421198)
chr3 (884-973)||(28741182-28741271)
chr3 (884-973)||(34707681-34707770)
chr3 (884-972)||(36182533-36182622)
chr3 (412-484)||(52416156-52416228)
chr3 (983-1034)||(51345586-51345637)
chr3 (884-973)||(40581044-40581134)
chr3 (888-970)||(43079906-43079988)
chr3 (896-973)||(52021275-52021353)
chr3 (884-973)||(1516066-1516155)
chr3 (889-950)||(29614245-29614306)
chr3 (884-973)||(40240545-40240634)
chr3 (884-973)||(53787720-53787809)
[»] chr8 (19 HSPs)
chr8 (884-972)||(24350487-24350575)
chr8 (884-972)||(38895689-38895777)
chr8 (884-973)||(10298894-10298983)
chr8 (884-970)||(32924181-32924266)
chr8 (884-950)||(38338819-38338885)
chr8 (884-973)||(9131096-9131185)
chr8 (884-973)||(4326180-4326270)
chr8 (884-972)||(24087200-24087289)
chr8 (884-973)||(24866919-24867008)
chr8 (884-973)||(28280738-28280827)
chr8 (884-972)||(32975717-32975805)
chr8 (913-973)||(35168438-35168498)
chr8 (886-964)||(14709507-14709584)
chr8 (888-970)||(35285960-35286042)
chr8 (884-950)||(42363285-42363351)
chr8 (884-973)||(2563387-2563476)
chr8 (884-973)||(14942453-14942542)
chr8 (884-973)||(19327896-19327984)
chr8 (884-941)||(29218219-29218276)
[»] scaffold0048 (1 HSPs)
scaffold0048 (884-973)||(58836-58925)
[»] scaffold0512 (1 HSPs)
scaffold0512 (884-973)||(4094-4182)
[»] scaffold0157 (1 HSPs)
scaffold0157 (884-973)||(24774-24865)
[»] scaffold0100 (1 HSPs)
scaffold0100 (983-1039)||(38520-38576)
[»] scaffold0057 (1 HSPs)
scaffold0057 (884-973)||(24357-24446)


Alignment Details
Target: chr2 (Bit Score: 920; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 920; E-Value: 0
Query Start/End: Original strand, 1 - 1100
Target Start/End: Complemental strand, 12267998 - 12266897
Alignment:
Q  1 tagaatcaaatccaaattgacaactttgaaggcctctttaatttctatagtgggaagggttcaagttattagattttaattcatagcatgagtatctata 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12267998 tagaatcaaatccaaattgacaactttgaaggcatctttaatttctatagtgggaagggttcaagttattagattttaattcatagtatgagtatctata 12267899  T
Q  101 gctttgtcatttattcattgtgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttattcaatgga 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12267898 gctttgtcatttattcattgcgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttatacaatgga 12267799  T
Q  201 ggattttgaaacatgtaagcatccttataaaacatctctccattggttgatttgttccatgcgtacattttacaaaatagaaaagnnnnnnngatgagga 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  12267798 ggattttgaaacatgtaagcatccttataaaacatctcaccattggttgatttgttccatgcgtacattttacaaaatagaaaagaaaaagagatgagga 12267699  T
Q  301 taaaccatttctgattattaatcaaatcttcgcctatattctatactctcttttattcttgacctatattctctatgctcnnnnnnnctcagaaggtttt 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  12267698 taaaccatttctgattattaatcaaatcttggcctatattctatactctcttttattcttgacctatattctctatgctctttttttctcagaaggtttt 12267599  T
Q  401 attcctctagatttttctgacaaggtttttaaagagacagatgttgagctcccttggcttctttggcttgggttttggtctagtttccctaaatactttt 500  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12267598 attcctctagatttttctgactaggtttttaaagagacagatgttgagctcccttggcttctttggcttgggttttggtctagtttccctaagtactttt 12267499  T
Q  501 gtatgtttcattctattttaataatatttttagggtaacggaaatgataggtgattaagaggtgccaacataattggaatgtcttggtttattatgtact 600  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12267498 gtatgtttcattctattttaataatattttaagggtaacggaaatgatagatgattaagaggtggcaacataattggaatgtcttggtttattatgtact 12267399  T
Q  601 gtctttgcactcatttttgttttaaaagataaaaagaaaaattatatatcctaagtcaccagattgggtcgacggggtcacaagtgcaaaaacctaaatc 700  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  12267398 gtctttgcactcatttttgttttaaaaaataaaaagaaaaattatatatcccacgtcaccggattgggtcaacgtggtcacaagtgcaaaaacctaaatc 12267299  T
Q  701 caaagatggaaccgatctcctatggttttatcgagttgggctgaattctacccataagtgaacgggttagggtaacagattgagtcactttaggtcgtca 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12267298 caaagatggaaccgatctcctatggttttatcgagttgggctgaattgtacccataagtgaacgggttagggtaacagattgagtcactttaggtcgtca 12267199  T
Q  801 ggttggtgggttgacccatacatgtgaacacgtcaacttgcttatctaatttggggtaatatcggacagagtgaaatggaatcttatgttaatttataag 900  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12267198 ggttcctgggttgacccatacatgtgaacacgtcaacttgcttatctaatttggggtaatatcggagagagtgaaatggaatcttatgttaatttataag 12267099  T
Q  901 ttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac--nnnnnnntcatttatttgcttaaac 998  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  12267098 ttttcactaataaaaattatatcttcataacctattttttcataaactacatcgacaagcttataaataatacaaaaaaaaatcatttatttgcttaaac 12266999  T
Q  999 tattttatataaacttaaaataagtcttatccaaacagaccttgtcaaccgaaatagcccagccacataaaaactataattcaacactaataaatgtggt 1098  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  12266998 tattttatataaacttaaaataagtcttatccaaatagaccttgtcaactgaaacagcccagccacttaaaaactatagttcaacactaataaatgtggt 12266899  T
Q  1099 ta 1100  Q
    ||    
T  12266898 ta 12266897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 736082 - 735993
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||| ||| |||||||||||||||| || |  |||||||||||||||||||    
T  736082 ttatgttaatttataagttctcaataacaaaaattatatcttcataaactattttttcataaaccaccttaacaagcttataaataatac 735993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 884 - 964
Target Start/End: Complemental strand, 4027043 - 4026963
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    ||||||||||| ||||||| ||||||| ||||||| ||||||| ||| || |||||||||||||||| | |||||||||||    
T  4027043 ttatgttaattcataagttctcactaacaaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttat 4026963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 889 - 1034
Target Start/End: Original strand, 13839760 - 13839904
Alignment:
Q  889 ttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatacnnnnnnntcatttat 988  Q
    |||||||||| ||||| | ||| ||||||||||||||| ||||   ||||||||||||||||||| | || |||||||||||||        | |||| |    
T  13839760 ttaatttatatgttttaattaacaaaaattatatcttcataactagttttttcataaactacatcaataaacttataaataatagaaaaatttaattt-t 13839858  T
Q  989 ttgcttaaactattttatataaacttaaaataagtcttatccaaac 1034  Q
    |||| |||||| ||||  ||||| ||||||| ||||||||||||||    
T  13839859 ttgcataaactgttttgcataaagttaaaattagtcttatccaaac 13839904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 884 - 970
Target Start/End: Original strand, 33321280 - 33321366
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    ||||||||||| | ||| | ||||||| ||||||| ||||||| ||| || |||||||||||||||| | ||||||||||| |||||    
T  33321280 ttatgttaattcacaagctctcactaacaaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataa 33321366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 886 - 972
Target Start/End: Complemental strand, 39070929 - 39070843
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||| ||||||||||||||| ||||||||||| ||  |||  |||||||||||||||||  |  | ||||||||||||||||    
T  39070929 atgttaattcataagttttcactaacaaaaattatatttttataagatattttttcataaactatcttaaaaagcttataaataata 39070843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 11777102 - 11777013
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||| |||||||||| ||||||| ||||| | ||||||| ||| || | |||||||||||||  |  |||||||||||||||||||    
T  11777102 ttatgttagtttataagttctcactaacaaaaagtgtatcttcataagctgtgttttcataaactaacttaacaagcttataaataatac 11777013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 36501483 - 36501572
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| || |||| |||||||   ||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  36501483 ttatgttaattcatgagttctcactaacgcaaattttatcttcataagctgttttttcataaactaccttgacaagcttatgaataatac 36501572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 38216137 - 38216048
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| | ||||||| |||||||  |||||| ||||||| ||  |||||||||| |||||||| | ||||||||||| ||||||||    
T  38216137 ttatgttaactcataagttctcactaacgaaaattgtatcttcatatgctattttttcctaaactaccttgacaagcttatgaataatac 38216048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 964
Target Start/End: Complemental strand, 8832575 - 8832495
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    ||||||||||| |||||||||||||||  |||||| ||||||  |||||| | |||||||||||||| | || ||||||||    
T  8832575 ttatgttaattcataagttttcactaacgaaaattgtatctttctaacctgtgttttcataaactaccttgaaaagcttat 8832495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 970
Target Start/End: Original strand, 38471759 - 38471845
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    |||| |||||| ||||||| |||||||  |||||| || |||| ||| || ||||||||||||||||||| | ||||||||| ||||    
T  38471759 ttatcttaattcataagttctcactaacgaaaattgtaccttcataaactgttttttcataaactacatcaagaagcttatacataa 38471845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 897 - 973
Target Start/End: Complemental strand, 12223957 - 12223881
Alignment:
Q  897 taagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||| |||||||| |||||  ||||||| ||| || |||||||||||||||| | |||| |||||| ||||||||    
T  12223957 taagttctcactaatgaaaatggtatcttcataaactgttttttcataaactaccttgacaggcttatgaataatac 12223881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 971
Target Start/End: Complemental strand, 39592364 - 39592280
Alignment:
Q  887 tgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataat 971  Q
    |||| ||| |||| || |||||||  |||||||||||||| ||| || | |||||||||||||| | ||||||||||| ||||||    
T  39592364 tgtttattcataaattctcactaaagaaaattatatcttcttaagctttattttcataaactaccttgacaagcttatgaataat 39592280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 2401590 - 2401656
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| ||||| |||||||| | ||||| ||||||| ||| ||| ||||| |||||||||||||||||    
T  2401590 ttattttaatctataagttctgactaacaaaaattgtattttcataacccattttttcataaactac 2401656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 889 - 943
Target Start/End: Complemental strand, 10988274 - 10988220
Alignment:
Q  889 ttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcat 943  Q
    ||||||| |||||||||| |||| |||||||||||||| |||  |||||||||||    
T  10988274 ttaatttttaagttttcattaatgaaaattatatcttcataaaatattttttcat 10988220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Complemental strand, 17546542 - 17546476
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||||||| ||||||||||||||||||  ||||| |||| ||| |||  | ||||||||||||||||    
T  17546542 ttatgttagtttataagttttcactaacgaaaatgatatattcataagttgttttttcataaactac 17546476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 22898325 - 22898391
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| ||||| |||||||||| |||||  |||||| ||| ||| ||||| |||||||||||||||||    
T  22898325 ttattttaatctataagttttgactaacgaaaattgtattttcataacccattttttcataaactac 22898391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 958
Target Start/End: Complemental strand, 37409761 - 37409687
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaa 958  Q
    ||||||||||||  ||||||||| ||| ||||||| ||| ||| |||  | |||||||||||||||||| |||||    
T  37409761 ttatgttaatttcgaagttttcaataacaaaaattgtattttcataaattgttttttcataaactacattgacaa 37409687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 887530 - 887441
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |  ||||| |||||| ||||||| ||| |   |||| |||||||||| | ||||||||||| ||||||||    
T  887530 ttatgttaattcataagttcttgctaatgaaaattgtatcttcataagcaggttttacataaactaccttgacaagcttatgaataatac 887441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 921
Target Start/End: Complemental strand, 23756445 - 23756408
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattata 921  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  23756445 ttatgttaatttataagttttcattaacaaaaattata 23756408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 949
Target Start/End: Original strand, 30995880 - 30995933
Alignment:
Q  896 ataagttttcactaataaaaattatatcttcgtaacctattttttcataaacta 949  Q
    ||||||||| ||||| |||||| |||| ||| ||| ||||||||||||||||||    
T  30995880 ataagtttttactaacaaaaatcatatattcataagctattttttcataaacta 30995933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 886 - 1041
Target Start/End: Complemental strand, 50919603 - 50919448
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatacnnnnnnntcatt 985  Q
    |||||||||||| |||||| | |||  |||||| ||||||| |||||| |||||| ||||||||||| ||||| |||||||||||||        |||||    
T  50919603 atgttaatttattagtttttattaacgaaaattgtatcttcataacctgtttttttataaactacattgacaaacttataaataatataaaaaactcatt 50919504  T
Q  986 tatttgcttaaactattttatataaacttaaaataagtcttatccaaacagacctt 1041  Q
    ||||||| |||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  50919503 tatttgcataaactattttatataaactcaaaataagccttatctaaactgacctt 50919448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 884 - 1034
Target Start/End: Original strand, 46500968 - 46501120
Alignment:
Q  884 ttatgttaatttataagttttcactaata-aaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac-nnnnnnnt 981  Q
    ||||||| |||||||||||||||||||   |||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||        |    
T  46500968 ttatgttgatttataagttttcactaacggaaaattgtatcttcataacctattttttcataaactacaatgacaagcttataaataatacaaaaaagct 46501067  T
Q  982 catttatttgcttaaactattttatataaacttaaaataagtcttatccaaac 1034  Q
    ||||||||| | |||| | |||||||||| || |||||||||||||| |||||    
T  46501068 catttatttacataaattgttttatataagctcaaaataagtcttattcaaac 46501120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 47413490 - 47413401
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||||||| ||||||| || | ||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||    
T  47413490 ttatgttaatttataatttttcaccaacacaaattatatcttcataacctgttatttcataaactacattgacaagcttataaataatac 47413401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 3069822 - 3069911
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||| | |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  3069822 ttatgttaattcataagttctcactagtgaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataatac 3069911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 6337724 - 6337813
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| || |||| ||||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  6337724 ttatgttaattcataagttctcgctaacaaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataatac 6337813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 41196678 - 41196767
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| | ||| | ||||||| ||||||| ||||||| ||| || |||||||||||||||||| ||||||||||| ||||||||    
T  41196678 ttatgttaattcacaagctctcactaacaaaaattgtatcttcataagctgttttttcataaactacattgacaagcttatgaataatac 41196767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 969
Target Start/End: Original strand, 41576363 - 41576448
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaata 969  Q
    |||||||||| |||||||| ||||||| ||||||||||||||| ||| |||| ||| ||||||| ||||  |||||||||||||||    
T  41576363 ttatgttaatatataagttatcactaacaaaaattatatcttcataaactatatttacataaacaacatttacaagcttataaata 41576448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 48819417 - 48819328
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||||||| ||||| | ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  48819417 ttatgttaattcataagttctcactaacaaaaaatgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataatac 48819328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 886 - 973
Target Start/End: Original strand, 15515317 - 15515404
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| ||||||| |||||||  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  15515317 atgttaattcataagttctcactaacgaaaattgtatcttcataagctcttttttcataaactaccttgacaagcttatgaataatac 15515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 894 - 972
Target Start/End: Complemental strand, 49971360 - 49971281
Alignment:
Q  894 ttataagttt-tcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||||||||| |||||||  |||||| ||||||||||| || ||||||||||||||||||  ||||||||||||||||||    
T  49971360 ttataagtttctcactaacgaaaattgtatcttcgtaagctgttttttcataaactacattaacaagcttataaataata 49971281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 41003505 - 41003416
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaacta-catcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||| | | ||||| ||||||||||||||    
T  41003505 ttatgttaattaataagttctcactaataaaaattatatcttagtaagct-gtttttcataaactacctttgacaaacttataaataatac 41003416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 37329380 - 37329469
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |||| ||  |||||| ||||||| ||| || |||||||||||||||| | |||||| |||| ||||||||    
T  37329380 ttatgttaatttataagttctcaccaacgaaaattgtatcttcataagctgttttttcataaactaccttgacaagtttatgaataatac 37329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 14461009 - 14461075
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    ||||||||||||||||||| |||||||| |||||| ||||||  ||| || ||||||||||||||||    
T  14461009 ttatgttaatttataagttctcactaatgaaaattgtatctttataaactgttttttcataaactac 14461075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 884 - 970
Target Start/End: Complemental strand, 26988266 - 26988180
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    ||||||||||| ||||||||| |||||  | |||| ||||||| ||| || |||||||||||||||| | ||||||||||| |||||    
T  26988266 ttatgttaattcataagtttttactaacgacaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataa 26988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28690122 - 28690033
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| | || || ||||||||||||||| ||||||| ||| || ||| |||||||||||| | ||||| ||||| ||||||||    
T  28690122 ttatgttaattcagaatttctcactaataaaaattgtatcttcataagctgtttgttcataaactaccttgacaaacttatgaataatac 28690033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 35282562 - 35282650
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||| |||||||||||||||| |||||| ||||||| |||  | |||||||||||||||| |  ||| | ||||||||||||    
T  35282562 ttatattaattcataagttttcactaattaaaattttatcttcataagttgttttttcataaactaccttaacatgtttataaataata 35282650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 42591500 - 42591412
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||||||||| |||||||||  |||| | ||||||| ||| ||||||||||||||| ||| |  |||| |||||||||||||    
T  42591500 ttattttaatttataagctttcactaacgaaaagtgtatcttcataaactattttttcataaaataccttaacaaacttataaataata 42591412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 889 - 972
Target Start/End: Original strand, 31378724 - 31378807
Alignment:
Q  889 ttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||||||||||||||| ||||| ||||||| ||||||  ||| |  |||||||||||||||| | ||||||||| | |||||||    
T  31378724 ttaatttataagtttttactaacaaaaattgtatctttataaacgtttttttcataaactaccttgacaagcttgttaataata 31378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 4068233 - 4068144
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||  |||||  ||||||| |||  | |||||||||||||||| | ||||||||||| ||||||||    
T  4068233 ttatattaattcataagttctcactaacgaaaatagtatcttcataagttgttttttcataaactaccttgacaagcttatgaataatac 4068144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 16888934 - 16889022
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| | |||| || |||||||| |||||| ||||||| ||| || |||||||||||||||| |  |||||||||| ||||||||    
T  16888934 ttatgttaagtcataaattctcactaatgaaaattgtatcttcataagctgttttttcataaactacct-tacaagcttatgaataatac 16889022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 22593375 - 22593464
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||  |||  |  |||||| |||||| |||  |||||||||| ||||||||    
T  22593375 ttatgttaatttataagttctcactaacaaaaattgtatctttataaagtgatttttcgtaaactgcatttacaagcttatgaataatac 22593464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 886 - 973
Target Start/End: Complemental strand, 1005456 - 1005369
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| ||||||| ||||||  ||||||| ||||||| |||    ||||||||| |||||| | ||||||||||| ||||||||    
T  1005456 atgttaattcataagttctcactatcaaaaattgtatcttcataagtagttttttcattaactacctagacaagcttatgaataatac 1005369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 886 - 964
Target Start/End: Complemental strand, 35590246 - 35590168
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    ||||||||| ||||||| ||||| |  |||||| ||||||| ||| || ||||||||||||| || | |||||||||||    
T  35590246 atgttaattcataagttctcactgacgaaaattgtatcttcataagctgttttttcataaacaaccttgacaagcttat 35590168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 45267584 - 45267494
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctatttttt-cataaactacatcgacaagcttataaataatac 973  Q
    ||||||| ||| ||||||| | |||||  |||||| ||||||| ||| || |||||| |||||||||| | |||||||| |||||||||||    
T  45267584 ttatgtttattcataagttcttactaacgaaaattgtatcttcataagctgtttttttcataaactaccttgacaagctaataaataatac 45267494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 945
Target Start/End: Complemental strand, 19395892 - 19395831
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataa 945  Q
    |||| |||||||||||| |||||||||  |||||| ||||||| |||| ||||||| |||||    
T  19395892 ttattttaatttataagctttcactaacgaaaattgtatcttcataacttatttttccataa 19395831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 969
Target Start/End: Complemental strand, 37712185 - 37712100
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaata 969  Q
    ||||||||||| ||||||| | |||||  ||| || ||||||| |||  | |||||||||||||||| | ||||||||||| ||||    
T  37712185 ttatgttaattcataagttcttactaacgaaagttgtatcttcataagttgttttttcataaactaccttgacaagcttatgaata 37712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 5e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 884 - 970
Target Start/End: Complemental strand, 27806033 - 27805947
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    ||||||||||||||||||||||||||| ||||||| ||||||  |||| | |||||||||||||||||| ||||||| |||||||||    
T  27806033 ttatgttaatttataagttttcactaacaaaaattgtatctttataacatgttttttcataaactacattgacaagcgtataaataa 27805947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28357259 - 28357170
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||||||  |||  |||||| ||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||    
T  28357259 ttatgttaatttataagttttcgttaacgaaaattgtatcttcataacctgttttttcataaactacattgacaagcttttaaataatac 28357170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 43319121 - 43319032
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||  ||||||||| |||| ||| || ||||||||||||||||||  |||||||||||||||||||    
T  43319121 ttatcttaattcataagttctcactaacgaaaattataccttcataaactgttttttcataaactacattaacaagcttataaataatac 43319032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 41419619 - 41419531
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||||| ||||||| |||||||  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| |||||||    
T  41419619 ttatgttaattgataagttctcactaacgaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataata 41419531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28625598 - 28625509
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||| ||| |||||||  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  28625598 ttatgttaattcataggttctcactaacgaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataatac 28625509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 2878645 - 2878732
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||| ||| || || |||||||||| |||| ||||| ||||| |||||||    
T  2878645 ttatgttaatttaaaagttttcactaacaaaaattgtatcttc-taaactgttgtttcataaaccacattgacaaacttatgaataata 2878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 38461248 - 38461339
Alignment:
Q  884 ttatgttaatttataagttttc--actaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||||| ||  ||||| ||||||||||||||| ||| || |||||||||||| |||||  |||| ||||||||||||||    
T  38461248 ttattttaatttataagttctctcactaacaaaaattatatcttcataaactgttttttcataaaatacatttacaaacttataaataatac 38461339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 13625488 - 13625577
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttt-tcataaactacatcgacaagcttataaataata 972  Q
    |||| ||||||||||||||||||||||  |||||| ||||||  ||| || ||||| ||||||||||| || |||||||||| |||||||    
T  13625488 ttatattaatttataagttttcactaacgaaaattttatctttataagctgtttttatcataaactacctcaacaagcttatgaataata 13625577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 29659178 - 29659089
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||| |||||| ||  ||| ||| || ||||||| ||||||||||  |||||||||||||||||||    
T  29659178 ttatcttaattcataagttctcactaatgaaaattgtactttcataaactgttttttcttaaactacattaacaagcttataaataatac 29659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 971
Target Start/End: Original strand, 40452445 - 40452533
Alignment:
Q  884 ttatgttaatttataagttttcactaat-aaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataat 971  Q
    ||||||| ||| ||||||| |||||||  ||||||||||||||| ||| || ||| |||||||||||| | ||||||||||| ||||||    
T  40452445 ttatgtttattcataagttctcactaacgaaaaattatatcttcataagctgtttcttcataaactaccttgacaagcttatgaataat 40452533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 970
Target Start/End: Complemental strand, 19840144 - 19840058
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    |||| |||||||||||||||||  |||  |||||| |||   | |||| | |||||||||||||||||| |||||||||||||||||    
T  19840144 ttattttaatttataagttttcgttaacgaaaattgtattcacataacatgttttttcataaactacattgacaagcttataaataa 19840058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 11991422 - 11991334
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||  | |||||||  |||||| ||| ||| |||| ||||||||||||||| | ||  |||||||||||||||||||    
T  11991422 ttatgttaatttataaactctcactaacgaaaattgtatgttcataac-tattttttcataaaccatatttacaagcttataaataatac 11991334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 13060570 - 13060659
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||  |||||  || |||| ||| || |||||||||||||||| | ||||||||||| || |||||    
T  13060570 ttatgttaattcataagttctcactaacgaaaatggtaacttcataagctgttttttcataaactaccttgacaagcttatgaacaatac 13060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 17657360 - 17657271
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||  |||||  ||||||| |||  | |||||||||||||||||  | ||||||||| ||||||||    
T  17657360 ttatgttaattcataagttctcactaacgaaaatcgtatcttcataagatgttttttcataaactacaatggcaagcttatgaataatac 17657271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 23087747 - 23087836
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| ||||||| ||||||| || |||| | |  | ||||||||||||||| ||  |||||||||||||||||||    
T  23087747 ttatattaattcataagttctcactaacaaaaattgtaccttcatgagttgttttttcataaactatattaacaagcttataaataatac 23087836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 24030332 - 24030244
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||  |||||| |||| ||| ||  | |||||||||||||||| | ||||||||||| ||||||||    
T  24030332 ttatgttaattcataagttctcactaacgaaaattgtatcctcgcaag-tgttttttcataaactactttgacaagcttatgaataatac 24030244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 925
Target Start/End: Complemental strand, 38498686 - 38498645
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatctt 925  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  38498686 ttattttaatttataagttttcactaacaaaaattatatctt 38498645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 887 - 964
Target Start/End: Original strand, 39154732 - 39154809
Alignment:
Q  887 tgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||||||| ||||||| ||| |||||||||||  |||||| ||| |  |||||||||||||||| | |||||||||||    
T  39154732 tgttaattcataagttctcaataataaaaattgcatcttcataatcagttttttcataaactaccttgacaagcttat 39154809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 964
Target Start/End: Complemental strand, 1576748 - 1576668
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||||||||||  |||||| ||||||| ||||||| |||||||  ||  | ||||| |||||||||||| |||||||||||    
T  1576748 ttatgttaattcttaagttctcactaacaaaaattgtatcttcacaagttgtttttccataaactacattgacaagcttat 1576668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 964
Target Start/End: Original strand, 1608067 - 1608147
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||||||||||  |||||| ||||||| ||||||| |||||||  ||  | ||||| |||||||||||| |||||||||||    
T  1608067 ttatgttaattcttaagttctcactaacaaaaattgtatcttcacaagttgtttttccataaactacattgacaagcttat 1608147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 964
Target Start/End: Complemental strand, 6144856 - 6144776
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||| |||||| ||||||| || |||| ||||||| ||| ||| ||| ||||||||||||||| ||| | |||||||||||    
T  6144856 ttatattaattcataagttctcgctaacaaaaattgtatattcataagctattttttcataaaataccttgacaagcttat 6144776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 890 - 973
Target Start/End: Complemental strand, 12467377 - 12467293
Alignment:
Q  890 taatttataagttttcactaataaaaattatatcttcgtaacctatttttt-cataaactacatcgacaagcttataaataatac 973  Q
    ||||| ||||||| ||||||| ||||||| | ||||| ||| || |||||| |||||||||| | ||||||||||| ||||||||    
T  12467377 taattcataagttctcactaacaaaaattgtctcttcataagctgtttttttcataaactaccttgacaagcttatgaataatac 12467293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 890 - 973
Target Start/End: Original strand, 12986988 - 12987071
Alignment:
Q  890 taatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||| ||||||| ||||||| ||||||  || |||| ||| || |||||||||||||||| | ||||||||||| || |||||    
T  12986988 taattcataagttctcactaacaaaaatggtaacttcataaactgttttttcataaactaccttgacaagcttatgaacaatac 12987071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 40697124 - 40697030
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctatttt-----ttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| |||||||||||  || ||||||| ||||||| ||| || ||||     |||||||| ||| | ||||||||||||||||||||    
T  40697124 ttatgttaattcataagttttcaggaacaaaaattgtatcttcataagctgttttttttcttcataaaataccttgacaagcttataaataatac 40697030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 43268604 - 43268646
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttc 926  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||    
T  43268604 ttatgttaatttataagttctcactaacaaaaattgtatcttc 43268646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 1868964 - 1868875
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||| ||| |||||||  |||||| ||||||| |||  |  ||||||||||||||| | ||||||||| | ||||||||    
T  1868964 ttatgttaattgatacgttctcactaacgaaaattgtatcttcataagttgatttttcataaactaccttgacaagcttgtgaataatac 1868875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28357470 - 28357381
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| ||||||  |||||| |||||||  ||||||  | |||| ||| || ||||||||||||||||||  |||| ||||||||||||||    
T  28357470 ttatcttaattcgtaagttctcactaacgaaaattggaccttcataaactgttttttcataaactacattaacaaacttataaataatac 28357381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 29418720 - 29418809
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| ||||||||||| || |||||||  |||||| || |||| |||  | ||||||||||||||||||   || |||||||||||||||    
T  29418720 ttatcttaatttataaattctcactaacgaaaattgtaccttcataaattgttttttcataaactacattagcatgcttataaataatac 29418809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 29922157 - 29922246
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||| | ||||||| ||||||| ||| | | ||| || | |||||||||||||| | ||||||||||| ||||||||    
T  29922157 ttatattaattcataagctctcactaaaaaaaattgtatatgcataagctgtgttttcataaactaccttgacaagcttatgaataatac 29922246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 886 - 972
Target Start/End: Complemental strand, 8601317 - 8601231
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||||||||||||| |||||||||| ||||||| ||||||| |||||  |||||||||||||||||| |||| ||||||||||||||    
T  8601317 atgttaatttataatttttcactaacaaaaattgtatcttcataaccagttttttcataaactacattgacaggcttataaataata 8601231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 886 - 966
Target Start/End: Complemental strand, 2405303 - 2405223
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataa 966  Q
    ||||||||| ||||||||||| ||| ||||||| ||||| | ||| ||||||||||||||||||||| |||||||||||||    
T  2405303 atgttaattaataagttttcattaaaaaaaattgtatctacataagctattttttcataaactacattgacaagcttataa 2405223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 488352 - 488441
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||   || | ||||||||||||||||| | ||||||||||| ||||||||    
T  488352 ttatgttaattcataagttctcactaataaaaattgtatctttacaagcaattttttcataaactaccttgacaagcttattaataatac 488441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 897088 - 896999
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| ||||||||||||||||||||||  |||||  ||||| |||||  | |||||||||||||||||| ||||||||||| ||||||||    
T  897088 ttatattaatttataagttttcactaacgaaaatcgtatctacgtaaattgttttttcataaactacattgacaagcttatgaataatac 896999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 42617198 - 42617264
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| ||||||||||||||||||||||  ||||| |||||||| ||| |||||||||||||||||||    
T  42617198 ttattttaatttataagttttcactaacgaaaatcatatcttcataaactattttttcataaactac 42617264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 10046350 - 10046261
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||| ||||||| |||  |||||| ||| ||| |||||| |||||| ||||||||||| |||||| ||||| |||||||    
T  10046350 ttatgttaatttatatgttttcaataacgaaaattgtattttcataacctgtttttttataaactacattgacaagtttatagataatac 10046261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 17222947 - 17222858
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| | |||||  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  17222947 ttatgttaattcataagttctaactaacgaaaattgtatcttcataatctgttttttcataaactaccttgacaagcttatgaataatac 17222858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 36255004 - 36255093
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||| |||||| ||||||| ||| || |||||||| ||||||| | ||||||||||| || |||||    
T  36255004 ttatgttaattcataagttctcactaattaaaattgtatcttcataagctgttttttcacaaactacgttgacaagcttatgaacaatac 36255093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 19725411 - 19725322
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||| | |||||||| |||||||||||||| ||  || |||||||||||| ||| |  |||| ||||||||||||||    
T  19725411 ttattttaatttataagctctcactaatgaaaattatatcttcatagactgttttttcataaaataccttaacaaacttataaataatac 19725322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 23335760 - 23335671
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||||| || |||||| ||||||| ||| || |||||||||||||||| | || | |||||| ||||||||    
T  23335760 ttatgttaattcataagttctcacttatgaaaattgtatcttcataagctgttttttcataaactaccttgatatgcttatgaataatac 23335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 29877757 - 29877668
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||||||| ||||||| ||||||| ||| ||  ||||||||||||||| |   ||||||||| ||||||||    
T  29877757 ttatgttaattcataagttctcactaacaaaaattgtatcttcataagctgctttttcataaactaccttagcaagcttatgaataatac 29877668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 35010329 - 35010240
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||||||| |||| |||||  ||| || ||||||  ||| ||||||| ||||||||||| | ||||| ||||||||||||||    
T  35010329 ttatgttaatttataaatttttactaacgaaacttgtatctttataaactattttatcataaactacgttgacaaacttataaataatac 35010240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 952
Target Start/End: Complemental strand, 9319166 - 9319098
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacat 952  Q
    |||||||||||| |||||||||| |||| |||||| || |||| ||| || ||||||||||||||||||    
T  9319166 ttatgttaatttttaagttttcagtaatgaaaattgtagcttcataaactgttttttcataaactacat 9319098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 46704238 - 46704326
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||| ||||||| |||||||| |||||| ||||||| ||| || |||||||||||||||| |  ||||||| || |||||||    
T  46704238 ttatattaattcataagttctcactaatgaaaattttatcttcataagctgttttttcataaactaccttaacaagctcatgaataata 46704326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 886 - 952
Target Start/End: Original strand, 4398176 - 4398242
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacat 952  Q
    ||||||| |||||| |||| | |||  |||||||||||||| ||||| |||||||||||||||||||    
T  4398176 atgttaaattataaatttttattaacgaaaattatatcttcataaccaattttttcataaactacat 4398242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 950
Target Start/End: Complemental strand, 15184664 - 15184598
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||||| |||||||  |||||| ||||||| ||| || ||||||||||||||||    
T  15184664 ttattttaatttataagttctcactaacgaaaattgtatcttcataaactgttttttcataaactac 15184598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 950
Target Start/End: Complemental strand, 22273898 - 22273832
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    ||||||||||| |||| || ||||||| ||||||| ||||||| ||| || ||||||||||||||||    
T  22273898 ttatgttaattcataacttctcactaacaaaaattgtatcttcataagctgttttttcataaactac 22273832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 970
Target Start/End: Complemental strand, 32628896 - 32628810
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    |||||||||||  |||||| ||||| || |||||| |||||||  || || |||||||||||| ||| ||||||||||||| |||||    
T  32628896 ttatgttaattcgtaagttctcactgatcaaaattgtatcttcacaagctgttttttcataaattacctcgacaagcttatgaataa 32628810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 52700511 - 52700601
Alignment:
Q  884 ttatgttaattt-ataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||| ||||||| | |||||  |||||  ||||||| ||| |||||||||||||||| || |  |||||||||||||||||||    
T  52700511 ttatgttaattttataagttcttactaacgaaaatcgtatcttcataaactattttttcataaaccacttttacaagcttataaataatac 52700601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28074482 - 28074394
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||| || | |||||||| ||||  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  28074482 ttatgttatttcacaagttttcgctaacgaaaattgtatcttcataagct-ttttttcataaactaccttgacaagcttatgaataatac 28074394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 825800 - 825712
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||||| ||||| ||||||||| ||||| | ||||||| | | || |||||||||||||||  | |||| |||||| |||||||    
T  825800 ttatgttaattcataagctttcactaacaaaaaatgtatcttcatgagctgttttttcataaactaactagacaggcttatgaataata 825712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 920 - 972
Target Start/End: Original strand, 2494404 - 2494456
Alignment:
Q  920 tatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||| ||| ||||||||||||||||||| |  ||||||||||||||||||    
T  2494404 tatcttcataaactattttttcataaactacctttacaagcttataaataata 2494456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 12495612 - 12495703
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac--atcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |||||||| || ||| ||||||  | | || ||||||||||||||||   | ||||||||||| ||||||||    
T  12495612 ttatgttaatttataagttctcactaatgaatattgtatcttgattagctgttttttcataaactaccttttgacaagcttatgaataatac 12495703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 913 - 973
Target Start/End: Original strand, 21216325 - 21216385
Alignment:
Q  913 aaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||| || |||| ||||||| ||||||||||||||| | ||||||||||| ||||||||    
T  21216325 aaaattgtagcttcataacctactttttcataaactaccttgacaagcttatgaataatac 21216385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 888 - 972
Target Start/End: Original strand, 48591396 - 48591480
Alignment:
Q  888 gttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||| ||||||| ||| |||  |||||| ||||||| ||| || |||||||||||||||| | ||||||| ||| |||||||    
T  48591396 gttaattcataagttctcattaacgaaaattgtatcttcataagctgttttttcataaactaccttgacaagcgtatgaataata 48591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 11679095 - 11679184
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgac-aagcttataaataatac 973  Q
    |||||||||||||||| |||| |||||  |||||| ||||||| |||  |  |||| ||||||||||||| || |||||||||||||||||    
T  11679095 ttatgttaatttataaattttaactaacgaaaattgtatcttcataa-tttgttttccataaactacatcaacaaagcttataaataatac 11679184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 11687374 - 11687463
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgac-aagcttataaataatac 973  Q
    |||||||||||||||| |||| |||||  |||||| ||||||| |||  |  |||| ||||||||||||| || |||||||||||||||||    
T  11687374 ttatgttaatttataaattttaactaacgaaaattgtatcttcataa-tttgttttccataaactacatcaacaaagcttataaataatac 11687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 38345790 - 38345856
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    ||||||||||| ||||||| |  |||||||||||| ||||||| |||  | ||||||||||||||||    
T  38345790 ttatgttaattcataagttctggctaataaaaattgtatcttcataagttgttttttcataaactac 38345856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 43415256 - 43415346
Alignment:
Q  884 ttatgttaatttataag-ttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||| |||||||||| ||| ||||||||||  |||  | ||||||| ||||||||||  |||| ||||| ||||||||    
T  43415256 ttatgttaattcataagtttttcactaacaaatattatatcttgataaattgttttttcgtaaactacattaacaaccttatgaataatac 43415346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 942
Target Start/End: Complemental strand, 48721938 - 48721880
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttca 942  Q
    |||| |||||| ||||||| ||||||| ||||||||||||||| |||  ||||||||||    
T  48721938 ttatattaattcataagttctcactaacaaaaattatatcttcataagttattttttca 48721880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 18424246 - 18424334
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||||||| ||| ||||||| ||||||| |||  |  ||||||||||||||| |  ||||| |||| ||||||||    
T  18424246 ttatgttaattcataagttttcaataacaaaaattgtatcttcataa-attgtttttcataaactaccttcacaagtttatgaataatac 18424334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 964
Target Start/End: Complemental strand, 36741019 - 36740942
Alignment:
Q  887 tgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||| ||| ||||||| |||||||| |||||| ||||||| | | || | |||||||||||||| | |||||||||||    
T  36741019 tgttgattcataagttctcactaatgaaaattgtatcttcatgaactgtattttcataaactactttgacaagcttat 36740942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 973
Target Start/End: Original strand, 39932734 - 39932811
Alignment:
Q  896 ataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||| ||||||||| ||||| ||||||| |||  | |||||||||| ||||| |  |||| ||||||||||||||    
T  39932734 ataagttctcactaatagaaattgtatcttcataaattgttttttcatacactaccttaacaatcttataaataatac 39932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 42611837 - 42611924
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||||| |  |||| | ||||||| |||  | |||||||||||||||| ||||||||||||| ||||||||    
T  42611837 ttatgttaattcataagttgtcact-acgaaaactgtatcttcataagttgttttttcataaactac-tcgacaagcttatgaataatac 42611924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 55638049 - 55638138
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |||||||   | ||| ||||||  ||| || ||||||||||||||| ||  |||| ||||| ||||||||    
T  55638049 ttatgttaatttataagttctcactaacggagattgtatctttataaactgttttttcataaactatatttacaaacttatgaataatac 55638138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 889 - 965
Target Start/End: Original strand, 18855243 - 18855319
Alignment:
Q  889 ttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttata 965  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  18855243 ttaatttataagttttcacttagcaaaattatatcttcataatctatttttccataaactacattgacaagcttata 18855319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 14691267 - 14691356
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||  |||||||||||||| |||  | |||||||||||| ||||| ||||||||||| ||||||||    
T  14691267 ttatgttaattcataagttctcactaacgaaaattatatcttcataaattgttttttcataaattacattgacaagcttatgaataatac 14691356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 892 - 972
Target Start/End: Complemental strand, 43391831 - 43391751
Alignment:
Q  892 atttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||||||||||||||| || ||||||||||||||| |||  |||||||||||||||||| |  |||| ||||| |||||||    
T  43391831 atttataagttttcacaaacaaaaattatatcttcataaattattttttcataaactaccttaacaaacttatgaataata 43391751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 883 - 973
Target Start/End: Original strand, 23119887 - 23119977
Alignment:
Q  883 cttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||| ||||||||||||||||| || ||||||| |||||||  || || || |||| |||||||||| ||||| ||||| ||||||||    
T  23119887 cttatgtaaatttataagttttcacgaacaaaaattgtatcttcacaaactgttatttcttaaactacattgacaaacttatgaataatac 23119977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 22032880 - 22032791
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||||| |||||||  |||||| || |||| |||  | ||||||||||||||||||  ||| |||||||||||||||    
T  22032880 ttatcttaatttataagttctcactaacgaaaattgtaccttcataaattgttttttcataaactacattaacatgcttataaataatac 22032791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 47654382 - 47654471
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||  |||||| || |||| ||| || ||||||||||||||||||  ||||||||||| |||||||    
T  47654382 ttatcttaattcataagttctcactaacgaaaattgtaccttcataaactgttttttcataaactacattaacaagcttatatataatac 47654471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 8180559 - 8180647
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||| ||||||||||||||||||| ||||||| ||  |||  || ||||| ||||||||| |  ||||||||||||||||||    
T  8180559 ttatattaattcataagttttcactaataaatattatatttttataagttaattttttataaactaccttaacaagcttataaataata 8180647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 14675928 - 14675994
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||| |||| ||||| |||||| ||||||| ||| || ||||||||||||||||    
T  14675928 ttattttaatttataagctttcgctaatgaaaattgtatcttcataaactgttttttcataaactac 14675994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 888 - 965
Target Start/End: Complemental strand, 16012812 - 16012735
Alignment:
Q  888 gttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttata 965  Q
    ||||||| |||||||||||||||  |||||| |||||||  || |  |||||||||||||||| | ||||||||||||    
T  16012812 gttaattcataagttttcactaacgaaaattgtatcttcagaagcagttttttcataaactactttgacaagcttata 16012735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 20888692 - 20888603
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||||||||  |  |||||| ||||||| |||  | |||||||||||||||| |   ||||||||| ||||||||    
T  20888692 ttatgttaatttataagttttcacggaagaaaattgtatcttcataaattgttttttcataaactacctttgcaagcttatgaataatac 20888603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 888 - 973
Target Start/End: Complemental strand, 29378759 - 29378674
Alignment:
Q  888 gttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||| ||||||| | |||||  |||||| ||||||| ||| || |||||||||||||||| | ||||| || |||||||||||    
T  29378759 gttaattcataagttcttactaacgaaaattgtatcttcataagctgttttttcataaactaccttgacaaactcataaataatac 29378674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 30181668 - 30181579
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| |||||||  ||||||| ||||   ||||||| ||| || |||||| ||||||||| | ||||||||||| ||||||||    
T  30181668 ttatgttaattcataagttcccactaatgaaaacagtatcttcataagctgttttttgataaactaccttgacaagcttatgaataatac 30181579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 48021616 - 48021703
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||| |||||||||||||||| |||||| ||||||| | |  || ||||||||||||||| |  |||||||||| |||||||    
T  48021616 ttatattaattcataagttttcactaatgaaaattgtatcttcattagtta-tttttcataaactactttaacaagcttatgaataata 48021703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 23137131 - 23137197
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||| | |||||||| |||||| ||||||| ||| | |||||| ||||||||||    
T  23137131 ttattttaatttataagctctcactaatgaaaattgtatcttcataaacgatttttacataaactac 23137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 918
Target Start/End: Complemental strand, 27811463 - 27811429
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaatt 918  Q
    ||||||||||||||||||||||||||| |||||||    
T  27811463 ttatgttaatttataagttttcactaacaaaaatt 27811429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 43818846 - 43818936
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatc-ttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||| |||||| || | ||| ||| || ||||||||||||  ||||  |||||||||||||||||||    
T  43818846 ttatcttaattcataagttctcactaatgaaaattgtaaccttcataaactgttttttcataaataacattaacaagcttataaataatac 43818936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 7e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 884 - 971
Target Start/End: Original strand, 21610017 - 21610104
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataat 971  Q
    |||| |||||||||||||| | |||||  |||||||||| ||| ||| |||||||||||||||||||||  |||||||||||||||||    
T  21610017 ttattttaatttataagttcttactaacgaaaattatatattcataaactattttttcataaactacattaacaagcttataaataat 21610104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 884 - 971
Target Start/End: Complemental strand, 8014906 - 8014819
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataat 971  Q
    |||||||||||||| ||||||||||||  |||||| ||||||| ||  |  |||||||||||||||| | ||||||||||| ||||||    
T  8014906 ttatgttaatttatcagttttcactaaccaaaattgtatcttcatatgcagttttttcataaactaccttgacaagcttatgaataat 8014819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 893 - 945
Target Start/End: Original strand, 715888 - 715940
Alignment:
Q  893 tttataagttttcactaataaaaattatatcttcgtaacctattttttcataa 945  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||    
T  715888 tttataagttttcactaacaaaaattgtatcttcataaactattttttcataa 715940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 948
Target Start/End: Original strand, 9202367 - 9202431
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaact 948  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||| ||  || ||||||||||||||    
T  9202367 ttatgttaattcataagttatcactaataaaaattgtatcttcatatgctgttttttcataaact 9202431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 10874102 - 10874014
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||||| |||||||||||| ||  |||||| ||||||| ||| || |||| ||||||||||| |  |||||||||| |||||||    
T  10874102 ttatgttaattcataagttttcaccaactaaaattgtatcttcataagctgttttctcataaactaccttaacaagcttattaataata 10874014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 932 - 973
Target Start/End: Original strand, 5958357 - 5958398
Alignment:
Q  932 ctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  5958357 ctattttttcataaactacatcgacaaacatataaataatac 5958398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 34510029 - 34509941
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||||| |||||    |||||||||||| ||| || |||| ||||||||| ||| ||||| ||||| ||||||||    
T  34510029 ttatgttaatttataagtttt-actaacgggaattatatcttcataaactcttttatcataaactccattgacaaacttatgaataatac 34509941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 969
Target Start/End: Complemental strand, 13429571 - 13429488
Alignment:
Q  887 tgttaatttataagttttcactaa-taaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaata 969  Q
    |||||||| ||||||| ||||||| | |||||| |||| || ||| || |||||||||||||||| | ||||||||||| ||||    
T  13429571 tgttaattcataagttctcactaaatgaaaattgtatcctcataaactgttttttcataaactactttgacaagcttatgaata 13429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 947
Target Start/End: Original strand, 32675857 - 32675920
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaac 947  Q
    |||| |||||| ||||||| |||||||| |||||| ||||||| |||  |||||||||||||||    
T  32675857 ttatattaattcataagttctcactaatgaaaattgtatcttcataagttattttttcataaac 32675920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 32165229 - 32165295
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||| | |||||||  |||||| ||||||| ||| || ||||||||||||||||    
T  32165229 ttattttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataaactac 32165295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 2255852 - 2255763
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||| ||| ||||||  ||||||| ||||||| ||| || |||||||||||| ||| |  |||||||||| ||| ||||    
T  2255852 ttatgttaattcatatgttctcactaccaaaaattgtatcttcataagctgttttttcataaattaccttaacaagcttatgaatcatac 2255763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 890 - 973
Target Start/End: Complemental strand, 10521266 - 10521183
Alignment:
Q  890 taatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||||| |||| |||||||||| |||  | || ||||||||||||||| ||||||||||| ||||||||    
T  10521266 taatttataagttttcactaacaaaagttatatcttcataaaatgttgtttcataaactacattgacaagcttatgaataatac 10521183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 884 - 1034
Target Start/End: Original strand, 35583688 - 35583845
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctatttttt------cataaactacatcgacaagcttataaataatacnnnn 977  Q
    |||||||||||||||||| ||||||||  |||||| ||||||| |||||| ||||||      |||||| ||||| ||||| ||||||| ||||||        
T  35583688 ttatgttaatttataagtcttcactaactaaaattgtatcttcataaccttttttttttctttcataaattacattgacaatcttataagtaataccaaa 35583787  T
Q  978 nnnt-catttatttgcttaaactattttatataaacttaaaataagtcttatccaaac 1034  Q
       | ||||||||| | |||||||||||| |||| || ||||||||||||||||||||    
T  35583788 aaattcatttattttcataaactattttacataacctcaaaataagtcttatccaaac 35583845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 890 - 1025
Target Start/End: Complemental strand, 10667510 - 10667373
Alignment:
Q  890 taatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac-nnnnnnntcatttat 988  Q
    |||| |||||||||||||||| |||| |||||||||| |||  | || ||||||||||||||| ||||||||||| ||||||||        | ||||||    
T  10667510 taatatataagttttcactaacaaaagttatatcttcataaaatgttgtttcataaactacattgacaagcttatgaataatacatataagcttatttat 10667411  T
Q  989 ttgcttaaactattttatataaactt-aaaataagtct 1025  Q
    |||| |||  |||||||||||||||| |||||||||||    
T  10667410 ttgcgtaagttattttatataaacttcaaaataagtct 10667373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 884 - 950
Target Start/End: Complemental strand, 37778251 - 37778185
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||||| ||||||| ||||||| ||||||| ||||| |||||||||||||||||    
T  37778251 ttattttaatttataagttctcactaacaaaaattgtatcttcataaccgattttttcataaactac 37778185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 42956147 - 42956236
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |||||||  |||||| ||||||  ||| || |||| ||||||||||| |||||||| |||| ||||||||    
T  42956147 ttatgttaatttataagttctcactaacgaaaattgtatctttataagctgttttatcataaactacttcgacaagtttatgaataatac 42956236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 922 - 1028
Target Start/End: Complemental strand, 27769725 - 27769619
Alignment:
Q  922 tcttcgtaacctattttttcataaactacatcgacaagcttataaataatacnnnnnnntcatttatttgcttaaactattttatataaacttaaaataa 1021  Q
    ||||| ||||| | ||||||||||||||||| |||||||||||||||||||        |||||||||||| |||  | ||||  ||||||| |||||||    
T  27769725 tcttcataaccaactttttcataaactacattgacaagcttataaataatataaaaagttcatttatttgcataagttgttttgcataaactcaaaataa 27769626  T
Q  1022 gtcttat 1028  Q
    |||||||    
T  27769625 gtcttat 27769619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 37243584 - 37243495
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||| ||| |||| | || |||| ||| ||||||||||||||||||| |  |||||||||||||||||||    
T  37243584 ttatcttaattcataagttctcaccaatgaaaagtgtaccttcataaactattttttcataaactacgttaacaagcttataaataatac 37243495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 53218008 - 53218097
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||||| |||||||  |||||| |||||||  ||  | |||||||||||||||| | ||||||||||| ||||||||    
T  53218008 ttattttaatttataagttctcactaacgaaaattgtatcttcaaaagttgttttttcataaactaccttgacaagcttatgaataatac 53218097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 913 - 973
Target Start/End: Complemental strand, 10448863 - 10448803
Alignment:
Q  913 aaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| |||| ||| || ||||||||||||||||||  |||||||||||||||||||    
T  10448863 aaaattataccttcataaactgttttttcataaactacattaacaagcttataaataatac 10448803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 907 - 973
Target Start/End: Original strand, 52421132 - 52421198
Alignment:
Q  907 ctaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| ||||||| ||||||| | | ||||||||||||||||||| | ||||||||||| ||||||||    
T  52421132 ctaacaaaaattgtatcttcattaactattttttcataaactaccttgacaagcttatgaataatac 52421198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 28741182 - 28741271
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| |||||||  |||||| || |||| ||| || |||||||||||||||| |  |||||||||||| ||||||    
T  28741182 ttatcttaattcataagttctcactaacgaaaattgtaccttcataatctgttttttcataaactactttaacaagcttataagtaatac 28741271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 34707681 - 34707770
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||  |||||| || ||||  |||||| ||||||||| | || |||||||||||||||| |  |||||||||| ||||||||    
T  34707681 ttatgttaattcgtaagttctcgctaacgaaaattgtatcttcgttagctgttttttcataaactaccttaacaagcttatgaataatac 34707770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 36182622 - 36182533
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaaccta-ttttttcataaactacatcgacaagcttataaataata 972  Q
    |||||||||||| ||| || || |||| ||||||||||| ||| ||| ||| |||||||||| ||||| |||| |||||||| |||||||    
T  36182622 ttatgttaatttttaaattctcgctaacaaaaattatatattcataagctagttttttcatatactacttcgaaaagcttatgaataata 36182533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 52416156 - 52416228
Alignment:
Q  412 tttttctgacaaggtttttaaagagacagatgttgagctcccttggcttctttggcttgggttttggtctagt 484  Q
    ||||||||||||||||||||| ||| ||||||   || | |||||| |  |||||||||||||||||||||||    
T  52416156 tttttctgacaaggtttttaatgaggcagatgccaagtttccttggttattttggcttgggttttggtctagt 52416228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 983 - 1034
Target Start/End: Original strand, 51345586 - 51345637
Alignment:
Q  983 atttatttgcttaaactattttatataaacttaaaataagtcttatccaaac 1034  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||| ||||    
T  51345586 atttatttgcataaactattttaaacaaacttaaaataactcttatcaaaac 51345637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 40581044 - 40581134
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctatttt-ttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| |||||||  |||||| | ||||| ||  || |||| |||||||||||| | ||||||||||| ||||||||    
T  40581044 ttatgttaattcataagttctcactaacgaaaattgtttcttcatacgctgtttttttcataaactaccttgacaagcttattaataatac 40581134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 888 - 970
Target Start/End: Original strand, 43079906 - 43079988
Alignment:
Q  888 gttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    ||||||| ||||||| ||| | |  |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| |||||    
T  43079906 gttaattcataagttctcaatcacgaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaataa 43079988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 896 - 973
Target Start/End: Complemental strand, 52021353 - 52021275
Alignment:
Q  896 ataagttttcactaataaaaattatatcttcgtaacctatttttt-cataaactacatcgacaagcttataaataatac 973  Q
    ||||||| |||||||  |||||||||||||| ||| || |||||| |||||||||| | ||||| ||||| ||||||||    
T  52021353 ataagttctcactaacgaaaattatatcttcataagctgtttttttcataaactaccttgacaatcttatgaataatac 52021275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 1516066 - 1516155
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||||| |||||||| |||||| ||||||  ||| ||  |||| |||||| ||| |  |||| ||||||||||||||    
T  1516066 ttattttaatttataagttctcactaatgaaaattgtatctttataaactgattttccataaaataccttaacaaacttataaataatac 1516155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 950
Target Start/End: Complemental strand, 29614306 - 29614245
Alignment:
Q  889 ttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||||||||||| | |||||||  |||||| ||||||| ||| || ||||||||||||||||    
T  29614306 ttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataaactac 29614245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 40240545 - 40240634
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||| | |||||||  |||||| ||||||| |||  | |||||||||||||||| | |||| |||||| ||||||||    
T  40240545 ttatcttaattcataagctctcactaacgaaaattgtatcttcataagttgttttttcataaactacctagacacgcttatgaataatac 40240634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 53787720 - 53787809
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| ||| ||| ||||||||||||||  ||| || ||||||| ||||||| ||  | |||||||||| ||||||    
T  53787720 ttatcttaattcataagttctcaataacaaaaattatatctttataaactgttttttcgtaaactatattaaaaagcttataagtaatac 53787809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 5e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 884 - 972
Target Start/End: Original strand, 24350487 - 24350575
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    ||||||||||| ||||||| | |||||  |||||||||||||| ||| ||||||||||||||| ||| | ||||||||||| |||||||    
T  24350487 ttatgttaattcataagttcttactaacgaaaattatatcttcataagctattttttcataaattacgttgacaagcttatgaataata 24350575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 38895777 - 38895689
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||| |||  |||||||||||||||||| |  |||||||||| |||||||    
T  38895777 ttatattaatttataagttttcactaacaaatattgtatcttcataaattattttttcataaactaccttaacaagcttatgaataata 38895689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 10298894 - 10298983
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||||| ||| ||| ||||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||| ||||    
T  10298894 ttatgttaattcataagttctcattaacaaaaattgtatcttcataagctgttttttcataaactaccttgacaagcttatgaatgatac 10298983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 884 - 970
Target Start/End: Original strand, 32924181 - 32924266
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    |||| |||||| ||||||||||||||| |||| || ||||||| |||  | ||||||||||||||||||  ||||||||||||||||    
T  32924181 ttatattaattcataagttttcactaagaaaattt-tatcttcataagttgttttttcataaactacataaacaagcttataaataa 32924266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 38338819 - 38338885
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||||||||| |||||||  ||||| |||||||| ||| |||||||||||||||||||    
T  38338819 ttattttaatttataagttctcactaacgaaaatcatatcttcataaactattttttcataaactac 38338885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 9131096 - 9131185
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| |||||||   |||||  |||||| ||||||| ||| || ||| |||| |||||| |||||||||||||||||||||||    
T  9131096 ttatgttaattcataagttccgactaacgaaaattgtatcttcataagctgtttcttcagaaactaaatcgacaagcttataaataatac 9131185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 4326180 - 4326270
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgt-aacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||||||| |||||||||| |||| |||| ||| | | |||| |||||||||||||||||||  | || ||||| ||||||||    
T  4326180 ttatgttaatttataaattttcactaacaaaatttatgtctacataaaccgattttttcataaactacatttataaacttatgaataatac 4326270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 24087289 - 24087200
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacc-tattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||||||||||||||| |||  |||||  ||||| ||||| | | |||||||||||||||  ||||||||||||| |||||||    
T  24087289 ttattttaatttataagttttcattaacgaaaatggtatctccgtaaacgttttttttcataaactatctcgacaagcttatgaataata 24087200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 24866919 - 24867008
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||||||||||| ||  |||  |||||| || |||| ||| || ||||||||||||||||||  |||| ||||||||||||||    
T  24866919 ttatcttaatttataagttctcgataacgaaaattgtaccttcataagctgttttttcataaactacattaacaatcttataaataatac 24867008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 28280827 - 28280738
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||| |||||| ||||||| ||||||| ||||  |||| |||| ||| |  ||||||||||||||||||  |||| ||||||||||||||    
T  28280827 ttatcttaattcataagttctcactaacaaaaggtataccttcataaacagttttttcataaactacattaacaaacttataaataatac 28280738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 972
Target Start/End: Complemental strand, 32975805 - 32975717
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataata 972  Q
    |||| |||||| ||||||| |||| || ||||||| ||||||| |||  | | |||||||||||||| | ||||||||||| |||||||    
T  32975805 ttatattaattcataagttctcacaaacaaaaattgtatcttcataagttgtgttttcataaactaccttgacaagcttatgaataata 32975717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 913 - 973
Target Start/End: Original strand, 35168438 - 35168498
Alignment:
Q  913 aaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||| ||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||    
T  35168438 aaaattgtatcttcataaactgttttttcataaactaccttgacaagcttatgaataatac 35168498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 886 - 964
Target Start/End: Original strand, 14709507 - 14709584
Alignment:
Q  886 atgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttat 964  Q
    |||||||||||||||||||||||||  |||||| ||| ||| | | || |||||||||||||||  | |||||||||||    
T  14709507 atgttaatttataagttttcactaactaaaattgtat-ttcatgagctgttttttcataaactagcttgacaagcttat 14709584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 888 - 970
Target Start/End: Complemental strand, 35286042 - 35285960
Alignment:
Q  888 gttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataa 970  Q
    ||||||| ||||||| || ||| |||||||| ||||||| ||| |  |||||||||||||||| | ||| ||||||| |||||    
T  35286042 gttaattcataagttctcgctactaaaaattgtatcttcataagcatttttttcataaactactttgacgagcttatgaataa 35285960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 950
Target Start/End: Original strand, 42363285 - 42363351
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac 950  Q
    |||| |||||||| ||||| ||||||| ||||||| ||||||| ||| |  ||||||||||||||||    
T  42363285 ttattttaatttaaaagttctcactaacaaaaattgtatcttcataaacggttttttcataaactac 42363351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 2563476 - 2563387
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||| ||||| | | ||||||||||||| ||| |||  ||  | |||||||||||||||| |  |||| ||||||||||||||    
T  2563476 ttatgttaattcataagatcttactaataaaaattgtatattcaaaagttgttttttcataaactactttaacaaacttataaataatac 2563387  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 14942542 - 14942453
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |  |||| |||||||  |||||| |||    |||||||||||||||  |  |||||||||||||||||||    
T  14942542 ttatgttaatttataagttcttgctaacaaaaattgcatcttcataagtcgttttttcataaactaacttaacaagcttataaataatac 14942453  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 19327984 - 19327896
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||| ||||||||||| ||| ||| ||||||| ||||||  ||| || ||||| ||||||||||||  |||| ||||| ||||||||    
T  19327984 ttatgtttatttataagttctcattaacaaaaattgtatctttataaactgtttttccataaactacat-tacaaacttatgaataatac 19327896  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 941
Target Start/End: Original strand, 29218219 - 29218276
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttc 941  Q
    |||| |||||||||||  | |||||||| |||||||||||||| ||| ||||||||||    
T  29218219 ttattttaatttataaactctcactaatgaaaattatatcttcataaactattttttc 29218276  T

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Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 58836 - 58925
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||||||| |||||||||||||||||   ||||| ||||||| |||  || ||||||||||||||||| ||||| ||||  ||||||||    
T  58836 ttatgttaaattataagttttcactaacggaaattgtatcttcataaaatactttttcataaactacattgacaaacttaagaataatac 58925  T

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Target: scaffold0512 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 4182 - 4094
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    |||||||||||||||||||  ||||||  |||||| ||| | | ||| ||||||||||||||||||  |  |||||||||||||||||||    
T  4182 ttatgttaatttataagttcccactaacgaaaattgtat-tacataagctattttttcataaactatctttacaagcttataaataatac 4094  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 973
Target Start/End: Complemental strand, 24865 - 24774
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactac--atcgacaagcttataaataatac 973  Q
    ||||||||||||||||||| |||||||| || ||| ||||||  | | || ||||||||||||||||   | ||||||||||| ||||||||    
T  24865 ttatgttaatttataagttctcactaatgaatattgtatcttgattagctgttttttcataaactaccttttgacaagcttatgaataatac 24774  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 983 - 1039
Target Start/End: Original strand, 38520 - 38576
Alignment:
Q  983 atttatttgcttaaactattttatataaac-ttaaaataagtcttatccaaacagacc 1039  Q
    |||||||||| ||||||||||||||||||| |||||||||| || |||||||| ||||    
T  38520 atttatttgcataaactattttatataaactttaaaataag-ctaatccaaacggacc 38576  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 24357 - 24446
Alignment:
Q  884 ttatgttaatttataagttttcactaataaaaattatatcttcgtaacctattttttcataaactacatcgacaagcttataaataatac 973  Q
    ||||| ||||| | ||||||| |||||  ||||||||||||||||||  | || ||| || |||||| | ||||||||||| ||||||||    
T  24357 ttatgataattcacaagtttttactaacgaaaattatatcttcgtaagttgttattttatcaactaccttgacaagcttatgaataatac 24446  T

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