View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_11 (Length: 657)
Name: NF15423_low_11
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 56392085 - 56392741
Alignment:
| Q |
1 |
atgagatgga-catcatcatctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagccactccattttgttggggtgagtaagga |
98 |
Q |
| |
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|||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
56392085 |
atgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcggccactccattttgttggggtgagtaagga |
56392184 |
T |
|
| Q |
99 |
catgtagtttgatgcaaaatgcctttagagttcatgaactccattaaatcctttttaaaatattcccctccattgtcagatctaatcacttttatacatg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56392185 |
catgtagtttgatgcaaaatgcctttagagttcatgaactccattaattcctttttaaaatattcccttccattgtcagatctaatcacttttatacatg |
56392284 |
T |
|
| Q |
199 |
tgttaaattgtgtaactatcatttgatgaaaggagcgaaacacatcatacacatcacttttatgttttaacaaatatacccaagttactcgagtacaatc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
56392285 |
tgttaaattgtgtaactatcatttgatgaaaggagcaaaacacatcatacacatcacttttatgttttaacaaatatacccaagttacccgagtacaatc |
56392384 |
T |
|
| Q |
299 |
atcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacaaaaaaggaaaatcggnnnnn |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
56392385 |
atcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcag--ttt |
56392482 |
T |
|
| Q |
399 |
nnnnattgcttaaaggataaacagcacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaa |
498 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56392483 |
ttttattggttaaaggataaacagcacgatggctttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaa |
56392582 |
T |
|
| Q |
499 |
taatttctttagataactaaaagaaggatgtcctaatcgtctatgcgatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatga |
598 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392583 |
taatttctttagataactaaaagaaagatgtcctgatcgtctatgccatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatga |
56392682 |
T |
|
| Q |
599 |
gccaatgttccattatgggtttgttgtgaaacattttcaagataatacagtccttcact |
657 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392683 |
gccaatgctccattatgggtttgttgtgaaacattttcaagataatacagtccttcact |
56392741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 27516326 - 27516982
Alignment:
| Q |
1 |
atgagatgga-catcatcatctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagccactccattttgttggggtgagtaagga |
98 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516326 |
atgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcagccactccattttgttggggtgagtaagga |
27516425 |
T |
|
| Q |
99 |
catgtagtttgatgcaaaatgcctttagagttcatgaactccattaaatcctttttaaaatattcccctccattgtcagatctaatcacttttatacatg |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27516426 |
catgtagtttgatgcaaaatgcctttagagttcatgaactccattaattcctttttaaaatattcccttccattgtcagatctaatcacttttatacatg |
27516525 |
T |
|
| Q |
199 |
tgttaaattgtgtaactatcatttgatgaaaggagcgaaacacatcatacacatcacttttatgttttaacaaatatacccaagttactcgagtacaatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27516526 |
tgttaaattgtgtaactatcatttgatgaaaggagcaaaacacatcatacacatcacttttatgttttaacaaatatacccaagttacccgagtacaatc |
27516625 |
T |
|
| Q |
299 |
atcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacaaaaaaggaaaatcggnnnnn |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
27516626 |
atcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcag--ttt |
27516723 |
T |
|
| Q |
399 |
nnnnattgcttaaaggataaacagcacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaa |
498 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27516724 |
ttttattgattaaaggataaacaaaacgatggctttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaa |
27516823 |
T |
|
| Q |
499 |
taatttctttagataactaaaagaaggatgtcctaatcgtctatgcgatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatga |
598 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516824 |
taatttatttagataactaaaagaaggatgccctaatcgtctatgccatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatga |
27516923 |
T |
|
| Q |
599 |
gccaatgttccattatgggtttgttgtgaaacattttcaagataatacagtccttcact |
657 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516924 |
gccaatgctccattatgggtttgttgtgaaacattttcaagataatacagtccttcact |
27516982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 52684278 - 52684336
Alignment:
| Q |
54 |
ctatttttcctctcagccactccattttgttggggtgagtaaggacatgtagtttgatg |
112 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||| | ||||||| ||||||| |
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|
| T |
52684278 |
ctatttttcctctccgctattccattttgttggggtgagttaacacatgtactttgatg |
52684336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 40456082 - 40456564
Alignment:
| Q |
17 |
catctattaagagtgatcgtgtcacttctaatatgtg-ctatttttcctctcagccactccattttgttggggtgagtaaggacatgtagtttgatgcaa |
115 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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|
| T |
40456082 |
catctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagccactccattttgttgaggtgaatatggacatgtagtttgatgcaa |
40456181 |
T |
|
| Q |
116 |
aatgcctttagagttcatgaactccattaaatcctttttaaaatattcccctccattgtcagatctaatcacttttatacatgtgttaaattgtgtaact |
215 |
Q |
| |
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||||||||||||||| | |||| |||| || ||||||||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||| || |
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| T |
40456182 |
aatgcctttagagtttaaaaactttgttaattcggttttaaaatattcccctccattgtctgatctaatgacctttatgcatatgttaaattgtgtttct |
40456281 |
T |
|
| Q |
216 |
atcatttgatgaaaggagcgaaacacatcatacacatcacttttatgttttaacaaatatacccaagttactcgagtacaatcatcaacaaaactgataa |
315 |
Q |
| |
|
||||| |||| ||| || |||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40456282 |
atcatctgataaaaagaacgaaacac---------atcacttttatgtttaagcaaatatacccaagttacccgagtacaatcatcaacaaaactgataa |
40456372 |
T |
|
| Q |
316 |
accattttt-tcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacaaaaaaggaaaatcggnnnnnnnnnattgcttaaagg |
414 |
Q |
| |
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||||||||| | |||||||| ||||| || |||| ||||||||||||||| || |||||||| ||||||||||| | | ||||||||| || |
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|
| T |
40456373 |
accatttttcttccattatgtgtagactgcggggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacag--attttttattgcttaaggg |
40456470 |
T |
|
| Q |
415 |
ataaacagcacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaataatttcttta |
509 |
Q |
| |
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| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
40456471 |
aaaaacaacacgatgactttttgcca-tacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaaacaatttcttta |
40456564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 538 - 647
Target Start/End: Original strand, 40456571 - 40456680
Alignment:
| Q |
538 |
tctatgcgatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatgagccaatgttccattatgggtttgttgtgaaacattttca |
637 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| || | ||||| |||||||||||||||| ||| ||||| ||||||||||| ||||||||| |
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| T |
40456571 |
tctatgccataaccaaatttcctttttatttttatcttgtgtgaggtcactcgcaagatgagccaatgctcctttatgagtttgttgtgagacattttca |
40456670 |
T |
|
| Q |
638 |
agataataca |
647 |
Q |
| |
|
|||||||||| |
|
|
| T |
40456671 |
agataataca |
40456680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 40089860 - 40089827
Alignment:
| Q |
423 |
cacgatgactttttgccattacacaagtttcaca |
456 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
40089860 |
cacgatggctttttgccattacacaagtttcaca |
40089827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 4243420 - 4243387
Alignment:
| Q |
423 |
cacgatgactttttgccattacacaagtttcaca |
456 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
4243420 |
cacgatggctttttgccattacacaagtttcaca |
4243387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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