View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_12 (Length: 624)
Name: NF15423_low_12
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 15180675 - 15181073
Alignment:
| Q |
1 |
tgctaatattgttttgaagtcaattcaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgta |
100 |
Q |
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| T |
15180675 |
tgctaatattgttttgaagtcaattaaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgta |
15180774 |
T |
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| Q |
101 |
aaattagatgggggatttagtaacattgaccaagtggtgattgataggaacaatgtgattggtatgattttaagatcaacggttgggaagttaagtgtgg |
200 |
Q |
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| T |
15180775 |
aaattagatgggggatttagtaacattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaacggttgggaagttaagtgtgg |
15180874 |
T |
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| Q |
201 |
atggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgtttcctaataggattagtcattttcagtattcatttcatacattagagggacc |
300 |
Q |
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| T |
15180875 |
atggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgtttcctaataggattagtcattttcagtattcatttcatacattagaaggacc |
15180974 |
T |
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| Q |
301 |
aaagtttgttgcaaattcagtgagtaatgtgtcaaataatgttgtagttgttgaaagtgagaaaccagttcatggtgttgtttctttctttgtcgaaca |
399 |
Q |
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| T |
15180975 |
aaagtttgttgcacattcagtgagtaatgtgtcaaataatgttgtagttgttgaaagtgagaaaccagttcatggtgttgtttcctactttgttgaaca |
15181073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 77 - 363
Target Start/End: Complemental strand, 38859142 - 38858856
Alignment:
| Q |
77 |
cctaataataatgttccaattgtaaaattagatgggggatttagtaacattgaccaagtggtgattgataggaacaatgtgattggtatgattttaagat |
176 |
Q |
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| T |
38859142 |
cctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgatcaagtggtgattgatagaaacaatgtgaatggtatgggcttgagat |
38859043 |
T |
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| Q |
177 |
caacggttgggaagttaagtgtggatggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgtttcctaataggattagtcattttcagta |
276 |
Q |
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| T |
38859042 |
caacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatttttcatcagttttggtatttcctaatcggattagtcatgttcaata |
38858943 |
T |
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| Q |
277 |
ttcatttcatacattagagggaccaaagtttgttgcaaattcagtgagtaatgtgtcaaataatgttgtagttgttgaaagtgagaa |
363 |
Q |
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| T |
38858942 |
ttcattttatgctcaaggggagccaaaatttgtagcacattctgtgaccaatgtatcagataatgttgtagttgtggagagtgagaa |
38858856 |
T |
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