View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_13 (Length: 595)
Name: NF15423_low_13
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 25895363 - 25894791
Alignment:
| Q |
17 |
taggaacacgcattcatgagagcgaaaatctagcttgtcagcattgtagggcctaaggagaggaaaacacgcacagccaaaaacttacaggaatttatag |
116 |
Q |
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| T |
25895363 |
taggaacacgcattcatgagagcgaaaatctagcttgtcagcattgtagggcctaaggagaggaaaacatgcacagccaaaaacttacaggaatttatag |
25895264 |
T |
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| Q |
117 |
tcaggatgctgttttaaaaagggaaaaataaggggtagcattgttgagag--gtggagggtaatctattaaggagg--taaacggcagtaagaaaagcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25895263 |
tcaggatgctgttttaaaaagggaaaaataaggggtagcattgttgagagaggtggagggtaatctattaaggaggggtaaacggcagtaagaaaagcat |
25895164 |
T |
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| Q |
213 |
gatccgaatattgaaggggaagagagacatgactcaa--gggtaaagccaaggtcaactatatgcccgtgctttctctcaacaacaccattttggtggtg |
310 |
Q |
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| T |
25895163 |
gatccgaatattgaaggggaagagagacatgactcaaaagggtaaagccaaggtcaaccatatgcccgtgctttctctcaacaacaccattttggtggtg |
25895064 |
T |
|
| Q |
311 |
tgtatgagggcaaataagtctatggatgatgccaagattagtgaggtatttggtaaagggtctgaactcacccccaatcagtttgaagagattttatttt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25895063 |
tgtatgagggcaaataagtctatggatgatgccaagattagtgaggtatttggtaaagggtctgaactcacccccaatcagtttgaagagaatttatttt |
25894964 |
T |
|
| Q |
411 |
gtgaccaaattgtaactcaaccatggttttaaattgtttgaaaatgg--agagtcagatttttgtttcaaaaaatagatctagcagcatctacaaaagag |
508 |
Q |
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| T |
25894963 |
gtgaccaaattgtaactcaaccatggttttaaattgtttgaaaatggatagagtcagatttttgtttcaacaaatagatctagcagcatctacaaaagag |
25894864 |
T |
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| Q |
509 |
atgtaatacagaaattgatttgtggaggggatgggagcaggaccccaaagatcataaaatacaagttcaagag |
581 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25894863 |
atttaatacagaaattgatttgtggaggggatgggagcaggaccccaaagatcataaaatacaagttcaagag |
25894791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 404
Target Start/End: Original strand, 32458936 - 32459084
Alignment:
| Q |
257 |
gccaaggtcaactatatgcccgtgctttctctcaacaacaccattttggtggtgtgtatgagggcaaataagtctatggatgatgccaagattagtgagg |
356 |
Q |
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|||||| || |||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||| || ||| | || || |
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| T |
32458936 |
gccaagatctactatatgcctatgttttctctccacaacaccattttggtgatgtgtatgaggacaaataagactatgactgatccctagagtggtaaga |
32459035 |
T |
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| Q |
357 |
tatttggtaaagggtctgaactcacc-cccaatcagtttgaagagattt |
404 |
Q |
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| T |
32459036 |
tgttgtgtaaaaggtctaaactcccctcccaatcagtttgtagagattt |
32459084 |
T |
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Back To:
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