View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_low_15 (Length: 585)
Name: NF15423_low_15
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_15 |
 | |
|
| [»] scaffold0103 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 252 - 576
Target Start/End: Original strand, 5990 - 6314
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5990 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatg |
6089 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
6189 |
T |
|
| Q |
452 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6190 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaacactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
6289 |
T |
|
| Q |
552 |
ttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
6290 |
ttgagtgacaatgacctttggttct |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5737 - 5857
Alignment:
| Q |
1 |
ttgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5737 |
ttgttgtttttggtttgtactgattatgtttctcaacttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
5836 |
T |
|
| Q |
101 |
tatggcaattacttcttgata |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5837 |
tatggcaattacttcttgata |
5857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 252 - 576
Target Start/End: Complemental strand, 2634019 - 2633695
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2634019 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatg |
2633920 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633919 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
2633820 |
T |
|
| Q |
452 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633819 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaacactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
2633720 |
T |
|
| Q |
552 |
ttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
2633719 |
ttgagtgacaatgacctttggttct |
2633695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 377 - 578
Target Start/End: Complemental strand, 12083029 - 12082828
Alignment:
| Q |
377 |
gcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgaga |
476 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
12083029 |
gcttgatcattaagtaattttaagaatttggttgctgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaaccagttaga |
12082930 |
T |
|
| Q |
477 |
tttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| |||| ||||||||| ||| ||| ||||||| |||| |
|
|
| T |
12082929 |
tttttgctaacttctttggaatattgaactgatttcattaggtgcaggactcataaatatggctacgtgtgaaatttgaatgataataacctttggttct |
12082830 |
T |
|
| Q |
577 |
cc |
578 |
Q |
| |
|
|| |
|
|
| T |
12082829 |
cc |
12082828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 2634272 - 2634152
Alignment:
| Q |
1 |
ttgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2634272 |
ttgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
2634173 |
T |
|
| Q |
101 |
tatggcaattacttcttgata |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2634172 |
tatggcaattacttcttgata |
2634152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 252 - 384
Target Start/End: Complemental strand, 12083839 - 12083707
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12083839 |
agacaattgcaagatgttgagacaaaagtaataagctgtgattaagttgcaaataaacaaattataagccatttgaatcagtgtttgtgatcaattgatg |
12083740 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatc |
384 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |
|
|
| T |
12083739 |
ttaaagatgaccatagatatcatttgcttgatc |
12083707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 488
Target Start/End: Original strand, 871786 - 871919
Alignment:
| Q |
355 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
454 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| |||| |||| | |||||||||||| |
|
|
| T |
871786 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctttgtcattggaacatgattttgttg |
871885 |
T |
|
| Q |
455 |
tttctttttgaaaccagtgagatttttgctaact |
488 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
871886 |
tttctttttgaaaccagtgagattattactaact |
871919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 252 - 576
Target Start/End: Original strand, 12808565 - 12808889
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12808565 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatg |
12808664 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808665 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
12808764 |
T |
|
| Q |
452 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
551 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12808765 |
ttatttcttttttaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggttgcgtgcgaaat |
12808864 |
T |
|
| Q |
552 |
ttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
12808865 |
ttgagtgacaatgacctttggttct |
12808889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 252 - 576
Target Start/End: Complemental strand, 37433442 - 37433118
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37433442 |
agacaattgcaagatgttgagacaaaagtaataagttgtgattaagttgcaaataaacggattataagccatttgaatcagtgtttgtgatcaattgatg |
37433343 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37433342 |
ttaaagatgaccatggatatcatttgcttgatcattaaggaactttaagaatttggttgttgtctgtgttatttttgtttgctattgaatcatgattttg |
37433243 |
T |
|
| Q |
452 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
551 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
37433242 |
ttatttccttttgaaaccagttagatttttgctaacttctttggaatattgaactgatttcattaggtgtaggaatcataaatatgtctacgtgtgaaat |
37433143 |
T |
|
| Q |
552 |
ttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
|||| ||||||| ||||||| |||| |
|
|
| T |
37433142 |
ttgaatgacaataacctttggttct |
37433118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 12808312 - 12808432
Alignment:
| Q |
1 |
ttgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808312 |
ttgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtt |
12808411 |
T |
|
| Q |
101 |
tatggcaattacttcttgata |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12808412 |
tatggcaattacttcttgata |
12808432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 276423 - 276290
Alignment:
| Q |
355 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
454 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| |||| |||| | |||||||||||| |
|
|
| T |
276423 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctttgtcattggaacatgattttgttg |
276324 |
T |
|
| Q |
455 |
tttctttttgaaaccagtgagatttttgctaact |
488 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
276323 |
tttctttttgaaaccagtgagattattactaact |
276290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 252 - 576
Target Start/End: Original strand, 21838094 - 21838416
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
|||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21838094 |
agacaattgcaatatgttgacacaaaagtaataagctgtgattaagttgcaaataaacggattataagtcatttgaatcagtgtttgtgatcaattgatg |
21838193 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21838194 |
ttaaagatgaccatggatatcatttgcttgatgat-aagtaatttta-gaatttggttgctgtttgtgttatttttgtttgctattgaatcatgattttg |
21838291 |
T |
|
| Q |
452 |
ttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaat |
551 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
21838292 |
ttatttccttttgaaaccagttagatttttgctaacttctttggaatattgaactgatttcattaggtgtaggactcataaatatggctacgtgttaaat |
21838391 |
T |
|
| Q |
552 |
ttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
|||| ||||||| ||||||| |||| |
|
|
| T |
21838392 |
ttgaatgacaataacctttggttct |
21838416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 252 - 471
Target Start/End: Complemental strand, 4807127 - 4806909
Alignment:
| Q |
252 |
agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatg |
351 |
Q |
| |
|
|||||||||||| ||||||| ||||| | |||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4807127 |
agacaattgcaatatgttgacacaaaagtaataagttgtgatcaagttgcaaataaacggattataagccatttgaatcagtgtttgtgatcaattgatg |
4807028 |
T |
|
| Q |
352 |
ttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttg |
451 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4807027 |
ttaaagatgaccatggatatcatttgcttgatgattaagtaatttt-agaatttggttgttgtttgtgttatttttgtttgctattgaatcatgattttg |
4806929 |
T |
|
| Q |
452 |
ttatttctttttgaaaccag |
471 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
4806928 |
ttatttccttttgaaaccag |
4806909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 254 - 576
Target Start/End: Complemental strand, 27261353 - 27261031
Alignment:
| Q |
254 |
acaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatgtt |
353 |
Q |
| |
|
|||||||||| ||||| | ||||| | ||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27261353 |
acaattgcaagatgtttacacaaaagtaataagctgtggttaagttgcaaataaacggattataagccatttgaattagtgtttgtgatcaattgatgtt |
27261254 |
T |
|
| Q |
354 |
aaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtt |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27261253 |
aaagatgaccatggatatcatttgcttgatcattaagtaattttaagaatttggttcctgtttgtgttatttttgtttgctattgaatcatgattttgtt |
27261154 |
T |
|
| Q |
454 |
atttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaattt |
553 |
Q |
| |
|
||||| |||||||| |||| |||||||||| ||||||||||||||| |||||| ||| ||| || ||||||||||| | ||| |||| | || |||||| |
|
|
| T |
27261153 |
atttccttttgaaatcagttagatttttgccaacttctttggaatattgaacttatttcattagttgtaggactcaaagatacggctacatgttaaattt |
27261054 |
T |
|
| Q |
554 |
gagtgacaatgacctttgcttct |
576 |
Q |
| |
|
| ||||||| ||||||| |||| |
|
|
| T |
27261053 |
taatgacaataacctttggttct |
27261031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 290 - 576
Target Start/End: Complemental strand, 32447503 - 32447217
Alignment:
| Q |
290 |
tgattaagttgcaaataaacagattataatccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaa |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
32447503 |
tgattaagttgcaaataaacggattataagccatttgaattagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaa |
32447404 |
T |
|
| Q |
390 |
gtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaactt |
489 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
32447403 |
gtaattttaagaatttggttcctgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaatcagttagatttttgctaactt |
32447304 |
T |
|
| Q |
490 |
ctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
576 |
Q |
| |
|
||||| |||| |||||||||| ||| || ||||||||||| | ||| |||| | || |||||||| ||||||| ||||||| |||| |
|
|
| T |
32447303 |
ctttgaaatattgaactgatttcattagttgtaggactcaaagatacggctacatgttaaatttgattgacaataacctttggttct |
32447217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 322 - 474
Target Start/End: Complemental strand, 4637817 - 4637665
Alignment:
| Q |
322 |
atttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgtt |
421 |
Q |
| |
|
|||||||| || |||| || || |||||| |||||||||||||| ||||||||||| |||||||| ||| |||||||| || ||||||||||||||||| |
|
|
| T |
4637817 |
atttgaattagagtttctggtctattgatcttaaagatggccattgatatcatttgtttgatcactaagaaattttaaaaatttggttgctgtttgtgtt |
4637718 |
T |
|
| Q |
422 |
atatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtga |
474 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
4637717 |
atttttgtttgctattcaatcatgattttggtattttttttttaaaccagtga |
4637665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 4638222 - 4638118
Alignment:
| Q |
7 |
tttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtttatggc |
106 |
Q |
| |
|
|||| ||||||| |||| ||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||||| | |
|
|
| T |
4638222 |
ttttgggtttgtgctgagtatgttttttatcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttggtgctgtttatgtc |
4638123 |
T |
|
| Q |
107 |
aatta |
111 |
Q |
| |
|
||||| |
|
|
| T |
4638122 |
aatta |
4638118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 4637994 - 4637951
Alignment:
| Q |
254 |
acaattgcaaaatgttgagacaaatgcaataagctgtgattaag |
297 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
4637994 |
acaattgcaaaatcttgagacaaaagcaataagttgtgattaag |
4637951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 25127392 - 25127261
Alignment:
| Q |
355 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
454 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| | | |||| | |||||||||||| |
|
|
| T |
25127392 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctgtc--attggaacatgattttgttg |
25127295 |
T |
|
| Q |
455 |
tttctttttgaaaccagtgagatttttgctaact |
488 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
25127294 |
tttctttttgaaaccagtgagattattactaact |
25127261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 27896851 - 27896807
Alignment:
| Q |
265 |
atgttgagacaaatgcaataagctgtgattaagttgcaaataaac |
309 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
27896851 |
atgttgagacaaaagtaataagctgtgattaagttgcaaataaac |
27896807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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