View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_19 (Length: 526)
Name: NF15423_low_19
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_19 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 25540916 - 25540391
Alignment:
| Q |
1 |
aaatgtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttccttctgaacattagaacaaagtaggcttctttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540916 |
aaatgtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttccttctgaacattagaacaaagtaggcttctttca |
25540817 |
T |
|
| Q |
101 |
ttaggaagaaaacgaccatggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540816 |
ttaggaagaaaacgatcatggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagt |
25540717 |
T |
|
| Q |
201 |
tgcatatgaaacgtacacatacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25540716 |
tgcatatgaaacgtacacatacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatg |
25540617 |
T |
|
| Q |
301 |
ttgttagaagcaacactgtatcaagttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540616 |
ttgttagaagcaacactgtatcaagttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggta |
25540517 |
T |
|
| Q |
401 |
aatttgatagatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540516 |
aatttgatagatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagat |
25540417 |
T |
|
| Q |
501 |
tttaagatttattaagtttttgatga |
526 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
25540416 |
tttaagatttattaagttttttatga |
25540391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 331 - 521
Target Start/End: Original strand, 25517048 - 25517237
Alignment:
| Q |
331 |
agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct |
430 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | ||||||||||| |
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| T |
25517048 |
agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct |
25517146 |
T |
|
| Q |
431 |
cagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttt |
521 |
Q |
| |
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|||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||||||| |
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| T |
25517147 |
cagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttttt |
25517237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 25534382 - 25534070
Alignment:
| Q |
5 |
gtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttccttctgaacattagaacaaagtaggcttctttcattag |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||| || |||||| || ||||||| |||||| ||||| | ||||| |||||| |||| | |||||| ||||| |
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| T |
25534382 |
gtaagacacctctcacatttgcagcaaa----gt-tttcttctcaaatgaagaaactgcatccttataaacatcagaacagagtaagtttctttgattag |
25534288 |
T |
|
| Q |
105 |
gaagaaaacg------accatggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacaca |
198 |
Q |
| |
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||| |||||| | || |||||||| |||||||| |||| ||| ||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| | |
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| T |
25534287 |
gaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcaataattgccaatgttcatgactatgaatggaagagtcaattagaga-aacata |
25534189 |
T |
|
| Q |
199 |
gttgcatatgaaacgtacacat------acttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatata |
292 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||| ||||| |
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| T |
25534188 |
gttgcatagaaaaggtacacattcagttacttggtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atata |
25534090 |
T |
|
| Q |
293 |
caactatgttgttagaagca |
312 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
25534089 |
caaatatgttgttagaagca |
25534070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 25526380 - 25526068
Alignment:
| Q |
5 |
gtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttccttctgaacattagaacaaagtaggcttctttcattag |
104 |
Q |
| |
|
||||||| |||||||||| |||| ||||||| ||||| || ||| ||| |||||| ||||| | |||||||||||| |||| | |||||| ||||| |
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| T |
25526380 |
gtaagacacctctcacatttgcatcaaaagt-----ttcttctcaaataaagaaactgcatccttataaacattagaacagagtaagtttctttgattag |
25526286 |
T |
|
| Q |
105 |
gaagaaaacg------accatggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacaca |
198 |
Q |
| |
|
||| |||||| | || |||||||| ||||||||||||| ||||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| | |
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| T |
25526285 |
gaataaaacgcacaaaatcagggtcaatggtttctgtgtcatcttcagtaattgccaatgttcatgactatgaatggaagagtcaattagaga-aacata |
25526187 |
T |
|
| Q |
199 |
gttgcatatgaaacgtacacatac------ttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatata |
292 |
Q |
| |
|
| ||||||||||| | |||||| | || |||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||| |||||||| |
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| T |
25526186 |
gctgcatatgaaatgcacacattcagttagtttgtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatata |
25526088 |
T |
|
| Q |
293 |
caactatgttgttagaagca |
312 |
Q |
| |
|
||| ||||| |||||||||| |
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| T |
25526087 |
caaatatgtcgttagaagca |
25526068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 327 - 521
Target Start/End: Complemental strand, 25525049 - 25524861
Alignment:
| Q |
327 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
426 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | | || |||||||||||||| ||||| | |
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|
| T |
25525049 |
tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttta------atatgatagatggaacaggtaacat |
25524956 |
T |
|
| Q |
427 |
tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttt |
521 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||| | |||||||||||||| |
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| T |
25524955 |
tcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagttttt |
25524861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 117 - 327
Target Start/End: Original strand, 25516144 - 25516359
Alignment:
| Q |
117 |
catggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtac |
216 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||||| | | |||| |||||||||||| |||| |
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|
| T |
25516144 |
catggtcaatgttttctgcgtcatcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattagaaa-aacatgtttgcatatgaaaggtac |
25516242 |
T |
|
| Q |
217 |
acat------acttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaag |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||| ||| |||||||||||| ||||||| |
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|
| T |
25516243 |
acattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaat |
25516342 |
T |
|
| Q |
311 |
caacactgtatcaagtt |
327 |
Q |
| |
|
| ||| |||||| |||| |
|
|
| T |
25516343 |
ctacattgtatctagtt |
25516359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25539815 - 25539748
Alignment:
| Q |
1 |
aaatgtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttcct |
68 |
Q |
| |
|
||||||||||| | | |||||| ||||||||||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
25539815 |
aaatgtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcct |
25539748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
| Q |
341 |
ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg |
385 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||| ||||| |
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|
| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg |
44461024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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