View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_low_20 (Length: 514)
Name: NF15423_low_20
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 39812646 - 39813143
Alignment:
| Q |
1 |
ttggaagaatatacaccttttctcgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812646 |
ttggaagaatatacaccttttctcgtggccggaacattgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactact |
39812745 |
T |
|
| Q |
101 |
actactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtgaatttgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812746 |
actactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtgaatttgctg |
39812845 |
T |
|
| Q |
201 |
catcaagcggtggcagtaacgaagaccaagtgaaacgtgtcttaagcaagataaggaagcaagattctggttcaaatcatgagaacatgttgcttgataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812846 |
catcaagcggtggcagtaacgaagaccaagtgaaacgtgtcttaagcaagataaggaagcaagattctggttcaaatcatgagaacatgttgcttgataa |
39812945 |
T |
|
| Q |
301 |
tgtatcaaacaaataccctctattaaggcgaaggcgcaggttgattgttatagcacttgattcctatgacagtaatggagatcctgataagaagttgatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812946 |
tgtatcaaacaaataccctctattaaggcgaaggcgcaggttgattgttatagcacttgattcctatgacagtaatggagatcctgataagaagttgatt |
39813045 |
T |
|
| Q |
401 |
gagatagttcaaaggataattaaagctgttcaattagaccctcaaactgcaagagtttcgggattcgctttgctgaccgctatgacaatgcaagaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39813046 |
gagatagttcaaaggataattaaagctgttcaattagaccctcaaactgcaagagtttcgggattcgctttgctgaccgctatgacaatgcaagaaac |
39813143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 15800635 - 15800825
Alignment:
| Q |
2 |
tggaagaatatacaccttttctcgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactacta |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || ||||||||||| || || | || || || |||||||||||||||||||||||||||| |
|
|
| T |
15800635 |
tggaagaatatacacctattctcgtggcccgaacactgtcgtacttatttgactcgagtcgcggcttgcaggatgaggcatccacaatggcaaactacta |
15800734 |
T |
|
| Q |
102 |
ctactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtga |
192 |
Q |
| |
|
|| | | ||| ||| || ||| || |||| ||||||||||||||||| || || ||||||||||| |||||||| || ||||||||||| |
|
|
| T |
15800735 |
ctccaggagacgatataactgtcgaccagtcattcaatgattcacttaaagacgtgcaggacatgtctcttaggctctctattgatggtga |
15800825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 471
Target Start/End: Original strand, 15800941 - 15801101
Alignment:
| Q |
311 |
aaataccctctattaaggcgaaggcgcaggttgattgttatagcacttgattcctatgacagtaatggagatcctgataagaagttgattgagatagttc |
410 |
Q |
| |
|
||||| |||||||| ||| || |||| ||||||||||||||||| |||||| || || |||||||| |||||||||||| |||| | ||| ||| |
|
|
| T |
15800941 |
aaatatcctctattgaggagacggcggaggttgattgttatagcggttgatttgtacgatgataatggagctcctgataagaatatgatccaaataattc |
15801040 |
T |
|
| Q |
411 |
aaaggataattaaagctgttcaattagaccctcaaactgcaagagtttcgggattcgcttt |
471 |
Q |
| |
|
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15801041 |
aaagaatcattaaagctgttcaactagaccctcaaactgcaagagtttcgggatttgcttt |
15801101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University