View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_23 (Length: 494)
Name: NF15423_low_23
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 106 - 458
Target Start/End: Original strand, 34985261 - 34985599
Alignment:
| Q |
106 |
tattccggtggcaatttcatcagtaattttataattctaatcaaatgttatttatgcgaagacattagaaacattgatgacacgatttagatcaacttag |
205 |
Q |
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| T |
34985261 |
tattacggtgacaatttcaactgtaattttttaattgtcgtcaactgttctttatgcgaagacattagaaacattgatgacacgatttagatcaacttac |
34985360 |
T |
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| Q |
206 |
cgtgaaggcannnnnnnnatttattttaattctgaagtgtaattaacttcaacatttaaccatagtatatctttctctatctgatgtatttttatttgga |
305 |
Q |
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| T |
34985361 |
cgtgaaggcatttttt--atttattttaattctaaagtgtaattaacttcaacatttaaccatagtatatctttctctatctgatgtatttttatttgga |
34985458 |
T |
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| Q |
306 |
tatgaattagaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggcagcttttcagatggtatagaaggaagctatggtgaa |
405 |
Q |
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| T |
34985459 |
tatgaattagaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggaagc------------atagaaggaagctatgatgaa |
34985546 |
T |
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| Q |
406 |
aaaatgcatgtggtaagtactataatatgctattaattttcctttaagaaatt |
458 |
Q |
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| T |
34985547 |
aaaatgcatgtggtaagttctataatatgctattaattttcctttaagaaatt |
34985599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 273 - 455
Target Start/End: Original strand, 34980802 - 34980985
Alignment:
| Q |
273 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggcagc |
372 |
Q |
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| T |
34980802 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
34980901 |
T |
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| Q |
373 |
ttttcagatggtatagaaggaagctatggtgaaa-aaatgcatgtggtaagtactataatatgctattaattttcctttaagaa |
455 |
Q |
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| T |
34980902 |
ttttcagatggagtagaaggaagctaggataaaacaaatgcatgtggtaagttctataatatgttattaatttttctttaagaa |
34980985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 453
Target Start/End: Original strand, 34993351 - 34993579
Alignment:
| Q |
225 |
tttattttaattctgaagtgtaattaacttcaacatttaaccatagtatatctttctctatctgatgtatttttatttggatatgaattagaatcaatgg |
324 |
Q |
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| T |
34993351 |
tttattttaaatcttaagtgtaattaacttcaacaattaaccatagtatatctttctctatctgatgtattattatttgaccatgaactagaatcaatgg |
34993450 |
T |
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| Q |
325 |
tcgacggcattttacaacattgtctcaggagcaaggattctaggcagcttttcagatggtatagaaggaagctatggtgaaaaaatgcatgtggtaagta |
424 |
Q |
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| T |
34993451 |
tgtacggcatttcacaacattgtctcaagagcagagataataggattctttacagatggagtagatggaagctataatgagaaaatgcatgtggttagtt |
34993550 |
T |
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| Q |
425 |
ctataatatgctattaattttcctttaag |
453 |
Q |
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| T |
34993551 |
caataatatgctattaaatatcctttaag |
34993579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 27581138 - 27581073
Alignment:
| Q |
225 |
tttattttaattctgaagtgtaattaacttcaacatttaaccatagtatatctttctctatctgat |
290 |
Q |
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| T |
27581138 |
tttagtttacttctaaagtgtaattaacttcaacaattaaccatagtatatctttctctatctgat |
27581073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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