View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_24 (Length: 465)
Name: NF15423_low_24
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 448
Target Start/End: Complemental strand, 50804040 - 50803612
Alignment:
| Q |
22 |
tctgtacctgtaatatcgtgatataatactgttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacatattctttcattgaaact |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804040 |
tctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacatattctttcattgaaact |
50803941 |
T |
|
| Q |
122 |
ttaaaaagtcataaaaa--tgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttcatcacttgtgtaacgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50803940 |
ttaaaaagtcataaaaaaatgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttcatcacttgtgtaacgtt |
50803841 |
T |
|
| Q |
220 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnnnncctttcttggccacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50803840 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgatttttttcctttcttggccacc |
50803741 |
T |
|
| Q |
320 |
actgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctagtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50803740 |
actgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctagtt |
50803641 |
T |
|
| Q |
420 |
gtgctcatatcatcatttcatttgaatgt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
50803640 |
gtgctcatatcatcatttcatttgaatgt |
50803612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 448
Target Start/End: Original strand, 50871837 - 50872265
Alignment:
| Q |
22 |
tctgtacctgtaatatcgtgatataatactgttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacatattctttcattgaaact |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871837 |
tctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacatattctttcattgaaact |
50871936 |
T |
|
| Q |
122 |
ttaaaaagtcataaaa--atgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttcatcacttgtgtaacgtt |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871937 |
ttaaaaagtcataaaaaaatgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttcatcacttgtgtaacgtt |
50872036 |
T |
|
| Q |
220 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnnnncctttcttggccacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50872037 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgatttttttcctttcttggccacc |
50872136 |
T |
|
| Q |
320 |
actgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctagtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50872137 |
actgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctagtt |
50872236 |
T |
|
| Q |
420 |
gtgctcatatcatcatttcatttgaatgt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
50872237 |
gtgctcatatcatcatttcatttgaatgt |
50872265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 448
Target Start/End: Original strand, 5286361 - 5286789
Alignment:
| Q |
22 |
tctgtacctgtaatatcgtgatataatactgttcctgtatttgtaattgttacgttcacaatttttattggaagtctttacatattctttcattgaaact |
121 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
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|
| T |
5286361 |
tctgtacctgtaatatagtggtataatactttttctgtatttgtaattgttacgttcacaatttttattggaagtttttacagattctttaattgaaact |
5286460 |
T |
|
| Q |
122 |
ttaaaaagtcataaaaa--tgtcacaaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttaggttcatcacttgtgtaacgtt |
219 |
Q |
| |
|
||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
5286461 |
ttataaagtcataaaaaaatgtcaccaataccatatgtattctcttccaagagatacatgaatgttgttgacaagttag-ttcatcacatgtgtaacgtt |
5286559 |
T |
|
| Q |
220 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttg-gtcatatttggtttcatgannnnnnncctttcttggccac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| || |
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|
| T |
5286560 |
gagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttgtgtcatatttggttttatgatttttttcctttcttggctac |
5286659 |
T |
|
| Q |
319 |
cactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctagt |
418 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5286660 |
cactgcatattaattttaatggtcccaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgattacaatggggcctaac |
5286759 |
T |
|
| Q |
419 |
tgtgctcatatcatcatttcatttgaatgt |
448 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
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|
| T |
5286760 |
tgtgctcatgccatcatttcatttgaatgt |
5286789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 203 - 447
Target Start/End: Original strand, 19058054 - 19058298
Alignment:
| Q |
203 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgannnnn |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19058054 |
atcacttgtgtaacgttgagttatatcaaagacagaaaagagaatgctctacaaaagagttttagaccatttcttggtcatatttggtttcatgattttt |
19058153 |
T |
|
| Q |
303 |
nncctttcttggccaccactgcatattaatcttaatggtctcaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19058154 |
ttcctttcttggccaccactgcatattaatcttaatggtcccaattgaaagggttttccctagagtagtaaaatcccacttaatgttcacaattgatgat |
19058253 |
T |
|
| Q |
403 |
tacaatggggcctagttgtgctcatatcatcatttcatttgaatg |
447 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
19058254 |
tacaatggggcctaactgtgctcataccatcatttcatttgaatg |
19058298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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