View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_low_26 (Length: 462)
Name: NF15423_low_26
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 26 - 446
Target Start/End: Original strand, 19713872 - 19714292
Alignment:
| Q |
26 |
attatagtaaaccacaaaagatttccgaaaaaacattgtaatttcgacaaattactttgataccaaatatgtacaaaacattaaagccagtgcatcaaac |
125 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19713872 |
attatagtaaaccacaaaagattaccgaaaaaacattgtaatttcgacaaattactttgataccaaatatgtacaaaacattaaagccagtgcatcaaac |
19713971 |
T |
|
| Q |
126 |
agcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccagttcctttctttggtttatgagacaaaaccttgagatgaaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19713972 |
cgcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccggttcctttctttggtttatgaggcaaaaccttgagatgaaag |
19714071 |
T |
|
| Q |
226 |
ctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgctattagtcttcg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19714072 |
ctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctgacgctattagtcttcg |
19714171 |
T |
|
| Q |
326 |
ctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttgtatatttaag |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19714172 |
ctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttgtatatttaag |
19714271 |
T |
|
| Q |
426 |
agttagagaagtaggagaaca |
446 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
19714272 |
agttagagcagtaggagaaca |
19714292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 116 - 446
Target Start/End: Original strand, 19719100 - 19719430
Alignment:
| Q |
116 |
tgcatcaaacagcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccagttcctttctttggtttatgagacaaaacctt |
215 |
Q |
| |
|
|||||||||| ||| ||||| |||||||| || |||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||| ||| |
|
|
| T |
19719100 |
tgcatcaaactgcataaacatcatgcacaaaacttgattctttcttgcttttcatgcctcgctttccagtacctttctttggtttctgaggcaaaatctt |
19719199 |
T |
|
| Q |
216 |
gagatgaaagctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgcta |
315 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
19719200 |
gagacgaaagctttgtagtgaagatccaaaacgatactttccaacatgagtaacagcattttctgcatcacaacgtttctggaaaacaactctgacgccg |
19719299 |
T |
|
| Q |
316 |
ttagtcttcgctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttg |
415 |
Q |
| |
|
||||||||| ||| | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
19719300 |
ttagtcttcactaagagttcggtctttgattcaattaagggcccaaaacagcataaaagcttgttgagaatagttgttgaaggaacagaatctttgtttg |
19719399 |
T |
|
| Q |
416 |
tatatttaagagttagagaagtaggagaaca |
446 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |
|
|
| T |
19719400 |
tatatttaagagttagcgcagtaggagaaca |
19719430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 85 - 444
Target Start/End: Original strand, 13028622 - 13028982
Alignment:
| Q |
85 |
ataccaaatatgtacaaaacattaaagccagtgcatcaaacagcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccag |
184 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| || ||||| ||||| ||||| || |||||||||||||||| ||||||| |||| | | |
|
|
| T |
13028622 |
ataccaaatatttacaaaacattaaagccaatgcatcaaactacaaaaacatcatgctcagaacttcattgtttcttgcttttactgcctctcttttcgg |
13028721 |
T |
|
| Q |
185 |
ttcctttctttggtttatgagacaaaaccttgagatgaaagctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatc |
284 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
13028722 |
tacctttctttggtttatgaggcaaaaccttgagacgaaagctttttagtgaagatccaaaacaatactttccgacatgagtaacaacagtttctgcatc |
13028821 |
T |
|
| Q |
285 |
acaacgtttctcgaaaacaactctggcgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgaga |
384 |
Q |
| |
|
||||||| ||| |||||||||| || || ||||||||||||| | |||||||| || |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13028822 |
acaacgtgtctggaaaacaactttgacgtcgttagtcttcgctaaaagttcagtctatgtttcaattaagggcccaaatttgcataaaagcttgttgaga |
13028921 |
T |
|
| Q |
385 |
atagctgttgaaggaacaaaatc-tttgtttgtatatttaagagttagagaagtaggagaa |
444 |
Q |
| |
|
|||| | |||||||||||||||| ||||||| || |||||||||| |||| ||| |||||| |
|
|
| T |
13028922 |
atagatattgaaggaacaaaatcttttgtttctaaatttaagagtcagagtagtgggagaa |
13028982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 116 - 446
Target Start/End: Original strand, 19702301 - 19702623
Alignment:
| Q |
116 |
tgcatcaaacagcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccagttcctttctttggtttatgagacaaaacctt |
215 |
Q |
| |
|
|||||||||| ||||||||| ||| ||| ||| ||||||||||||||||||||| ||| | || ||||||||||||||||||| |||| |||| |
|
|
| T |
19702301 |
tgcatcaaactgcagaaacaacattcacggaacttgattgtttcttgcttttccagcc--------cggtacctttctttggtttatgaggcaaatcctt |
19702392 |
T |
|
| Q |
216 |
gagatgaaagctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgcta |
315 |
Q |
| |
|
|||| |||||| || ||||| ||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
19702393 |
gagacgaaagcattttagtgaagatccaaaacgatactttccaacatgagtaacagcattttctgcatcacaacgtttctggaaaacaactctgacgccg |
19702492 |
T |
|
| Q |
316 |
ttagtcttcgctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttg |
415 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
19702493 |
ttagtcttcgctaagagttcggtctttgattcaattaagggcccaaaacagcataaaagcttgttgagaatagttgttgaaggaacagaatctttgtttg |
19702592 |
T |
|
| Q |
416 |
tatatttaagagttagagaagtaggagaaca |
446 |
Q |
| |
|
||| |||||||||||| | |||||||||||| |
|
|
| T |
19702593 |
tatgtttaagagttagcgcagtaggagaaca |
19702623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 108 - 428
Target Start/End: Original strand, 34971629 - 34971949
Alignment:
| Q |
108 |
aaagccagtgcatcaaacagcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccagttcctttctttggtttatgagac |
207 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| |||| |||||||||||||||||||||| |||| ||||| ||| | || |||||||||||||| | |
|
|
| T |
34971629 |
aaagccaatgcatcaaactgcagaaacatcatgcaaagaacttgattgtttcttgcttttcctacctctctttcgagtacattcctttggtttatgaggc |
34971728 |
T |
|
| Q |
208 |
aaaaccttgagatgaaagctttgtagtgcagatccaaaacgatactttccgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactc |
307 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
34971729 |
aaaaccttgagacaaaagctttttagtgaagatccaaaacgatactttccgacatgagtaaaagcagtttctgcatcacaacgtttctggaaaacgagtt |
34971828 |
T |
|
| Q |
308 |
tggcgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatc |
407 |
Q |
| |
|
| ||| ||||||||| ||| | |||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |
|
|
| T |
34971829 |
ttacgccgttagtcttcactaaaagttcagtctttgagtcaattaagggcccaaatttgcataaaagtttgttgagaatagctattgaagggacagaatt |
34971928 |
T |
|
| Q |
408 |
tttgtttgtatatttaagagt |
428 |
Q |
| |
|
||||||| || |||||||||| |
|
|
| T |
34971929 |
tttgtttctaaatttaagagt |
34971949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 13028550 - 13028593
Alignment:
| Q |
26 |
attatagtaaaccacaaaagatttccgaaaaaacattgtaattt |
69 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
13028550 |
attatagtaaaccacaaaacatttctgaaaaaacattgtaattt |
13028593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 19643045 - 19643101
Alignment:
| Q |
377 |
tgttgagaatagctgttgaaggaacaaaatctttgtttgtatatttaagagttagag |
433 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| || ||| |||||||||| |
|
|
| T |
19643045 |
tgttgagaatagttgttgaaggaacataatctttgtttctaagttttagagttagag |
19643101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 42153933 - 42154061
Alignment:
| Q |
101 |
aaacattaaagccagtgcatcaaacagcagaaacaccatgcacagaagttgattgtttcttgcttttcctgcctcgctttccagttcctttctttggttt |
200 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |||||||| || ||||||||||||| |||| | ||| || ||||||||| || ||||||||||| |
|
|
| T |
42153933 |
aaacattaaagccaatgcatcaaactgcagaaacatcatgcacataacttgattgtttcttactttccttgcttctctttccagtacccttctttggttt |
42154032 |
T |
|
| Q |
201 |
atgagacaaaaccttgagatgaaagcttt |
229 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |
|
|
| T |
42154033 |
atgaggcaaaaccttgagacgaaagcttt |
42154061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 42154081 - 42154257
Alignment:
| Q |
275 |
tttctgcatcacaacgtttctcgaaaacaactctggcgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagcagcataaaag |
374 |
Q |
| |
|
||||||||||||||||||| | |||||||||| || | ||||||||||||| || ||||||||||||||||||||| | |||| |||| |||| |
|
|
| T |
42154081 |
tttctgcatcacaacgtttatggaaaacaactttgatgtcgttagtcttcgctaacagttcagtctttgattcaattaaagactcaaatttgcattaaag |
42154180 |
T |
|
| Q |
375 |
cttgttgagaatagct-------gttgaaggaacaaaatctttgtttgtatatttaagagttagagaagtaggagaa |
444 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||| || |||||||| | |||| |||||||||| |
|
|
| T |
42154181 |
cttgttgagaatagctattgaaatttgaaggaacatagtctttgtttctaaatttaagaatgagagcagtaggagaa |
42154257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 28749486 - 28749585
Alignment:
| Q |
264 |
agtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaag |
363 |
Q |
| |
|
|||||| ||||||||||||| ||||||| | | |||||||||||||| || |||||||||| ||||| ||||||||| ||||||||| ||| |||||| |
|
|
| T |
28749486 |
agtaaatgcagtttctgcattacaacgtctttggaaaacaactctggtgcctttagtcttcggtagcagttcagtcttccattcaattaggggtccaaag |
28749585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 445
Target Start/End: Original strand, 28752325 - 28752613
Alignment:
| Q |
160 |
ttgcttttcctgcctcgctttccagttcctttctttggtttatgagacaaaaccttgagatgaaagctttgtagtgcagatccaaaa---cgatactttc |
256 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| || | | ||||| | |||| | | |||||||||| || |||||| | |||||||| |
|
|
| T |
28752325 |
ttgctttttctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttc |
28752424 |
T |
|
| Q |
257 |
cgatatgagtaaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgctattagtcttcgctagcaattcagtctttgattcaattaaggg |
356 |
Q |
| |
|
| | | |||||||||||||||||||||| ||| | | |||||||||||| || | |||||| || |||| | |||||||||||||||| || || |
|
|
| T |
28752425 |
cagcactactaaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcacggttagtcctctctagaagctcagtctttgattcaactagcgg |
28752524 |
T |
|
| Q |
357 |
accaaagcagcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttgtatatttaagagttagagaagtaggagaac |
445 |
Q |
| |
|
||||||| || || | |||||||||| |||||||||||||| |||| ||||||| |||| || || |||||||| ||||||| |
|
|
| T |
28752525 |
cccaaagcggccaaagatcttgttgagatccgctgttgaaggaactgaatccaagtttgtaaatttcagggtaagagaagtgggagaac |
28752613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 445
Target Start/End: Complemental strand, 44866319 - 44866140
Alignment:
| Q |
266 |
taaaagcagtttctgcatcacaacgtttctcgaaaacaactctggcgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagca |
365 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||| |||||| ||||||||| | || | || ||||||||||||||||| | ||||||| |
|
|
| T |
44866319 |
taaaagcagtttctgcatcacaatatcgttcaaaaacaactttggcgcggttagtcttctcgagaagtttagtctttgattcaattagtgtcccaaagcg |
44866220 |
T |
|
| Q |
366 |
gcataaaagcttgttgagaatagctgttgaaggaacaaaatctttgtttgtatatttaagagttagagaagtaggagaac |
445 |
Q |
| |
|
|| || | |||||||||| | ||||| |||||| |||| ||||||| |||| ||||| |||||||| ||||||| |
|
|
| T |
44866219 |
gccaaagatcttgttgagatccgttgttgtaggaactgaatccaagtttgtaaatttcagagtaagagaagttggagaac |
44866140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 27120138 - 27120180
Alignment:
| Q |
392 |
ttgaaggaacaaaatctttgtttgtatatttaagagttagaga |
434 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
27120138 |
ttgaaggaacaaaatctttgtttctaaatttaagagatagaga |
27120180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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