View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_27 (Length: 461)
Name: NF15423_low_27
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 9070777 - 9070347
Alignment:
| Q |
19 |
tccaatttatgttgctgattcggacgaagatatcgttgatttggaccttgtatcttgtaccaagatgtccgacgtcaacgcgtctatgataggatcagac |
118 |
Q |
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| T |
9070777 |
tccaatttatgttgctgattcggacgaagatatcgttgatttggaccttctatcttgtactaagatgttcgacgtcaacgcgtctatgatgggatcagac |
9070678 |
T |
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| Q |
119 |
ctgaggtctaattttctcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaataccaccaaac |
218 |
Q |
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| T |
9070677 |
ctgaggtataattttctcagattgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaacaccaccaaac |
9070578 |
T |
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| Q |
219 |
ctggcattgaatgtttttattgcaaccataaacataaaaaatttcagcctccaaaagctcttattttttcagctataggtgagtctttattatatttcaa |
318 |
Q |
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| T |
9070577 |
ctggcattgaatgtttttattgcaaccaaaaacataaaaaatttcagcctccaaaagctcttattttttcggctataggtgagtctttattatatttcaa |
9070478 |
T |
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| Q |
319 |
agtactatttgcgtcttctttattattttatttgtttatactgggaggaaaatgtaactgttaatgtgt----taatgcaggttcaattatattgggaat |
414 |
Q |
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| T |
9070477 |
agtactatttgcgtcttctttattattttatttgtttatactgggaggaaaatgtaactgttaatgtgttaattaatgcaggttcaattatattgggaat |
9070378 |
T |
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| Q |
415 |
gggaaccattgtatttattaagatttatctg |
445 |
Q |
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| T |
9070377 |
gggcaccattgtatttattaagatttatctg |
9070347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 8862534 - 8862454
Alignment:
| Q |
127 |
taattttctcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaa |
207 |
Q |
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| T |
8862534 |
taattttctctctttaagttggccgaaacataattgtacaaggtgcgaagcaaatggcatgaaatgcaaatggaagaacaa |
8862454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 8866401 - 8866329
Alignment:
| Q |
135 |
tcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaa |
207 |
Q |
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| T |
8866401 |
tcagtttgagttggcctgaacaaaattgtacaaaatgcaaagctaaaagcatgaaatgcaaatggaagaacaa |
8866329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 9108945 - 9108905
Alignment:
| Q |
42 |
acgaagatatcgttgatttggaccttgtatcttgtaccaag |
82 |
Q |
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| T |
9108945 |
acgaagatatcgttgatttgaaccttgtattgtgtaccaag |
9108905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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