View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_29 (Length: 443)
Name: NF15423_low_29
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 50804374 - 50804051
Alignment:
| Q |
1 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804374 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
50804275 |
T |
|
| Q |
101 |
ctgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctag |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50804274 |
ctgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctag |
50804175 |
T |
|
| Q |
201 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804174 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
50804075 |
T |
|
| Q |
301 |
gctgcagagggatgtttcagtacc |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50804074 |
gctgcagagggatgtttcagtacc |
50804051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 50871503 - 50871826
Alignment:
| Q |
1 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871503 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
50871602 |
T |
|
| Q |
101 |
ctgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctag |
200 |
Q |
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| T |
50871603 |
ctgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctag |
50871702 |
T |
|
| Q |
201 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871703 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
50871802 |
T |
|
| Q |
301 |
gctgcagagggatgtttcagtacc |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50871803 |
gctgcagagggatgtttcagtacc |
50871826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 348 - 443
Target Start/End: Complemental strand, 50804057 - 50803962
Alignment:
| Q |
348 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgatcacaatttttattggaagtcttt |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50804057 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtcttt |
50803962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 348 - 443
Target Start/End: Original strand, 50871820 - 50871915
Alignment:
| Q |
348 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgatcacaatttttattggaagtcttt |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50871820 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgttcacaatttttattggaagtcttt |
50871915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 5286030 - 5286350
Alignment:
| Q |
5 |
tggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
102 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5286030 |
tggattgataggaatgatgcgttgtggaacaccgaggggtaaggagaatgcagtcgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
5286129 |
T |
|
| Q |
103 |
gaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagag |
202 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5286130 |
gaaagggtagttaaggcaccagctattgccggattacttcaaaccctattatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagag |
5286229 |
T |
|
| Q |
203 |
tgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5286230 |
tgtttcagagatgtgaaaatgcatctctgcattacggtggattaggtgtaggctatgcatttgctagcaattcagctcaaactagagattcaagctttgc |
5286329 |
T |
|
| Q |
303 |
tgcagagggatgtttcagtacc |
324 |
Q |
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||||| |||||||||||||||| |
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| T |
5286330 |
tgcag-gggatgtttcagtacc |
5286350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 348 - 439
Target Start/End: Original strand, 5286344 - 5286435
Alignment:
| Q |
348 |
cagtaccaatgtccatctctgtacctgtaatatagtgatataatacttttcctgtatttgtaattgttacgatcacaatttttattggaagt |
439 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5286344 |
cagtaccaatgtcaatctctgtacctgtaatatagtggtataatactttttctgtatttgtaattgttacgttcacaatttttattggaagt |
5286435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 19057811 - 19058025
Alignment:
| Q |
1 |
tgtttggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgc |
98 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057811 |
tgtttggattgataggaatgatgcgttgtggaacaccgatgggtaaggagaatgcagttgcagcattgctcgagttatgccggagtggaggttcagctgc |
19057910 |
T |
|
| Q |
99 |
aactgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgct |
198 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
19057911 |
aactgaaagggtggttaaggcaccagctattgccggattacttcaaaccctactatttaccgggacaaagtgagctagacgtaaagccgcttcacttgct |
19058010 |
T |
|
| Q |
199 |
agagtgtttcagaga |
213 |
Q |
| |
|
||||||||||||||| |
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| T |
19058011 |
agagtgtttcagaga |
19058025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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