View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_3 (Length: 1074)
Name: NF15423_low_3
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 406 - 1065
Target Start/End: Complemental strand, 52846655 - 52845995
Alignment:
| Q |
406 |
gcaacaaattatagaaatggttggtctttaataaatctcatcaagatttacaaaccactagccccatctatgtttcaactctaccaagtcaannnnnnnn |
505 |
Q |
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| T |
52846655 |
gcaacaaattatagaaatggttgatctttaataa-tctcatcaagatttacaaaccactagccccatccatatttcaactctaccaagtcaacatttttt |
52846557 |
T |
|
| Q |
506 |
nn-atggcatggtatgcattaccttattaccattttaacatatatactaagtgaatttgattttggttgtaaaagttagagtatggatatctctttggac |
604 |
Q |
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| T |
52846556 |
tttatggcatggtatgcattaccttattaccattttaacatatatactaagtgaatttgattttggttgtaaaagttagagtatggatatctctttggac |
52846457 |
T |
|
| Q |
605 |
atactataatagggggaaaataattttaaaacttataattttttaacattatttgaaatttaagaaactaaagtgtgattgttcacaaggaataagaaca |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52846456 |
atactataatagggggaaaataattttaaaacttataattttttaacattatttgagatttaagaaactaaagtgtgattgttcacaaggaataagaaca |
52846357 |
T |
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| Q |
705 |
ttttaagaaaacagaaaatagacaacttccttctgttccattgttcctaagcttcgtaccgaggaaattagaagaaaataaataaatggcatacaatgca |
804 |
Q |
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| T |
52846356 |
ttttaagaaaacagaaaatagacaacttcctcctgttccattgttcctaagcttcgtaccgaggaaattagaagaaaataaataaatggcatacaatgca |
52846257 |
T |
|
| Q |
805 |
atgggttttattatattttagaagcaaactcaaccttgtttggatatgaaacttactaaccgtatagttcttcactagtttgaaggaaaaattagcatca |
904 |
Q |
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| T |
52846256 |
atgggttttattatattttagaagcaaactcaaccttgtttggatatgaaacttactaaccgtatagttcttcactagtttgaaggaaaaattagcatca |
52846157 |
T |
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| Q |
905 |
tattgaataaagtctgattattttcatttgaagcagttagttaataa-nnnnnnnatcaaattcatatatgcaatannnnnnnaagtgaaccaaaattat |
1003 |
Q |
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| T |
52846156 |
tattgaataaagtctgattattttcatttgaagcagttagttaataattttttttatcaaattcatatatgcaatattttttttagtgaaccaaaattat |
52846057 |
T |
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| Q |
1004 |
aagattgtttaaagtattgccataatatttaatgcaatgtagatattactgtatagtataat |
1065 |
Q |
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| T |
52846056 |
aagattgtttaaagtattgccataatatttaatgcaatgtagatattactgtatagtataat |
52845995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 52847043 - 52846745
Alignment:
| Q |
18 |
aaagttgtcttcagaatactcaggttgcttgaaaaggttctcattagaaatagacgaaccagatgttgttctgtcaagattctcaggaatgacatttgta |
117 |
Q |
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| T |
52847043 |
aaagttgtcttcagaatactcaggttgcttgaaaaggttctcattagaaatagacgaaccagatgttgttctgtcaagattctcaggaatgacatttgta |
52846944 |
T |
|
| Q |
118 |
accggactaagatcattagaaacacctgaccattctgaggcccaatcttgatctactcttaaaacttgatctttcccaactgattggagcaaattttgaa |
217 |
Q |
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| T |
52846943 |
accggactaagatcattagaaacacctgaccattctgaggcccaatcttgatctactcttaaaacttgatctttcccaactgattggagcaaattttgaa |
52846844 |
T |
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| Q |
218 |
agagatcacgttgtttagttaattctttgatctccttatccttctgcaaattttcaaattaagtaggaaaaggactaactgaatcaaaaccatcaatag |
316 |
Q |
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| T |
52846843 |
agagatcacgttgtctagttaattctttgatctccttatccttctgcaaattttcaaattaaggaggaaaaggactaactgaatcaaaaccatcaatag |
52846745 |
T |
|
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