View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_low_30 (Length: 436)
Name: NF15423_low_30
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 6094594 - 6095001
Alignment:
| Q |
1 |
gcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataatcccattttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |
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| T |
6094594 |
gcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattttctcttt-----------------cccattttt |
6094676 |
T |
|
| Q |
101 |
ctccaataggttgcaaatgtattggccactttagtacaaatatttaaaagccaaacatcaaccattcatttctagattttgtttaatccctcnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094677 |
ctccaataggttgcaaatgtattggccactttagtacaaacatttaaaagccaaacatcaaccattcatttctagattttgtttaatccctcaaaaaaaa |
6094776 |
T |
|
| Q |
201 |
nnnnntctggataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacatt |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
6094777 |
aatattctagataaatgtattcttaaacaaaatcaaagcatataaatgtactggttgggttgaacaaaattgaacacattttctataaaaacaacacatt |
6094876 |
T |
|
| Q |
301 |
aaccataatcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
6094877 |
aaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgctgcaattggcgttgaaa |
6094976 |
T |
|
| Q |
401 |
tgattgattctcttcagacattctt |
425 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
6094977 |
agattgattctcttcagacattctt |
6095001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 44188441 - 44188855
Alignment:
| Q |
9 |
caaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataatcccatttttctccaata |
108 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
44188441 |
caaagcctattcacttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctcctttgattgtgaactataatcccatttttctccaata |
44188540 |
T |
|
| Q |
109 |
ggttgcaaatgtattggccactttagtacaaatatttaaaagccaaacatcaaccattcatttctagattttgtttaatccctcnnnnnnnnnnnnntct |
208 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
44188541 |
ggctgcaaatgtatttgccactttagtacaaatatttaaa-gccaaacatcaaccattcatatctagattttgtttaatccat-aaaaaaaaaatattct |
44188638 |
T |
|
| Q |
209 |
ggataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44188639 |
agataaatgtattcttaaacaaaatcaaagcatacaaatgtactggttggattgaacaaaattgaacacattttctataaaaacaacacattaaccataa |
44188738 |
T |
|
| Q |
309 |
tcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgat |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| || |
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|
| T |
44188739 |
tcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcat |
44188838 |
T |
|
| Q |
409 |
tctcttcagacattctt |
425 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
44188839 |
tctcttcagacattctt |
44188855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 210 - 425
Target Start/End: Original strand, 44162520 - 44162735
Alignment:
| Q |
210 |
gataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44162520 |
gataaatgtattcttaaacaaaatcaaagcatacaaatgtactggttggattgaacaaaattgaacacattttctataaaaacaacacattaaccataat |
44162619 |
T |
|
| Q |
310 |
cataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgatt |
409 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||| |
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|
| T |
44162620 |
cataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcatt |
44162719 |
T |
|
| Q |
410 |
ctcttcagacattctt |
425 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
44162720 |
ctcttcagacattctt |
44162735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 32727568 - 32727983
Alignment:
| Q |
9 |
caaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataatcccatttttctccaata |
108 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
32727568 |
caaagcctattcacttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctcctttgattgtgaactataatcccgtttttctccaata |
32727667 |
T |
|
| Q |
109 |
ggttgcaaatgtattggccactttagtacaaatatttaaaagccaaacatcaaccattcatttctagattttgtttaatccctcnnnnnnnnnnnnntct |
208 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
32727668 |
ggctgcaaatgtatttgccactttagtacaaatatttaaaagccaaacatcaaccattcatttttagattttgtttaatccat-aacaaaaaaatattct |
32727766 |
T |
|
| Q |
209 |
ggataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataa |
308 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || |
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|
| T |
32727767 |
agatgaatgtattcttaaacaaaatcaaagcatacaaatgtactggttggattgaacaaaattgaatacattttctataaaaacaacacattaaccacaa |
32727866 |
T |
|
| Q |
309 |
tcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgat |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| || |
|
|
| T |
32727867 |
tcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcat |
32727966 |
T |
|
| Q |
409 |
tctcttcagacattctt |
425 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32727967 |
tctcttcagacattctt |
32727983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 265 - 425
Target Start/End: Original strand, 32718839 - 32718999
Alignment:
| Q |
265 |
caaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaag |
364 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32718839 |
caaaattgaacacattttctataaaaacaacacattaaccacaatcataaaaataaattaatattgaataaatacttacagcagcttgtaacttgtcaag |
32718938 |
T |
|
| Q |
365 |
ttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattctt |
425 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
32718939 |
ttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattctt |
32718999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 225 - 424
Target Start/End: Complemental strand, 43095497 - 43095301
Alignment:
| Q |
225 |
aaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaatta |
324 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||| ||| ||||| |||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
43095497 |
aaacaaaatcaaagcatataaatgtattgattggactgaacaaaattaaacgcattt---ataaaaacaaaacactaagcataatcataaaaataaatta |
43095401 |
T |
|
| Q |
325 |
acattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattct |
424 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
43095400 |
atattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgctgcaattggcgttgaaaagattgattctcctcagacattct |
43095301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 43095649 - 43095515
Alignment:
| Q |
1 |
gcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttgattgtgacctataatcccattttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43095649 |
gcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccattttt |
43095550 |
T |
|
| Q |
101 |
ctccaataggttgcaaatgtattggccactttagt |
135 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
43095549 |
ctccaataggctgcaaatgtattggccactttagt |
43095515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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