View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_32 (Length: 425)
Name: NF15423_low_32
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 40453473 - 40453059
Alignment:
| Q |
6 |
aggagcagagacagtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccaccaaagagattaatggtg |
105 |
Q |
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| T |
40453473 |
aggagcagtgacagtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccaccaaagtgattaatggtg |
40453374 |
T |
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| Q |
106 |
ttggaagaagaagaagaag---catgattagtgttaagacatatggctgttgaggcttgtgatgcacagaagatttcaatgcctttcattttttggaata |
202 |
Q |
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| T |
40453373 |
ttggaagaagaagaagaagaagcatgattagtattaagacatatggctgttgaggcttgtgatgcacagaagatttcaatgcctttcattttttggaata |
40453274 |
T |
|
| Q |
203 |
tgatcagttagaagaattgatggtttggttagagattctgtagtga-----------aggatggttgatactagtgaatgcttttaaacttcaattcctt |
291 |
Q |
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| T |
40453273 |
tgatcagttagaagaattgatggtttggttagagattctgtagtgaaggaaaatataaggatggttgatactagtgaatgcttttaaacttcaattcctt |
40453174 |
T |
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| Q |
292 |
tgggattttctgtaaagagtgcttgaaatggagagaaagaaaacagaaagagataggtatggaagtggaaaattcagaattcagtttagattctttgttt |
391 |
Q |
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| T |
40453173 |
tgggattttctgtaaagagtgcttgaaatggagagaaagaaaacagaaagagataggtatggaagtggaaaattcagaattcagtttagattctttgttt |
40453074 |
T |
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| Q |
392 |
aagtagagtttaatt |
406 |
Q |
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| T |
40453073 |
aagtagagtttaatt |
40453059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 31252282 - 31252213
Alignment:
| Q |
18 |
agtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccac |
88 |
Q |
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| T |
31252282 |
agtgagatctcttgagggagttctttttggatctgtgatgat-gggttgtggcaatcaatggctctaccac |
31252213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 31258051 - 31257987
Alignment:
| Q |
124 |
gcatgattagtgttaagacatatggctgttgaggcttgtgatgcacagaagatttcaatgccttt |
188 |
Q |
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| T |
31258051 |
gcatgatcagcgttaagatagatggctgttgaggcttgtgatgcacataagatttcaatgccttt |
31257987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 31257960 - 31257917
Alignment:
| Q |
145 |
atggctgttgaggcttgtgatgcacagaagatttcaatgccttt |
188 |
Q |
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| T |
31257960 |
atggctgttgaggcttgtgatgaacataagatttcaatgccttt |
31257917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 29144662 - 29144600
Alignment:
| Q |
137 |
taagacatatggctgttgaggcttgtgatgcacagaagatttcaatgcctttcattttttgga |
199 |
Q |
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| T |
29144662 |
taagacatattgctgttgaggcttgtgaagcacagaagatatccattcttttcatcttttgga |
29144600 |
T |
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