View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_33 (Length: 406)
Name: NF15423_low_33
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 42629661 - 42629327
Alignment:
| Q |
21 |
aaggagtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnngg |
120 |
Q |
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| T |
42629661 |
aaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatatacttgaaaaaaaagg |
42629562 |
T |
|
| Q |
121 |
ataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggcgagagctgccaaataatagtttatgagga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42629561 |
ataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggccagagctgccaaataatagtttatgagga |
42629462 |
T |
|
| Q |
221 |
aagccttctaccaattgaaagaattaacaattagtgttttttcacacaagaggt----acatgcctttggttattatgatttttaataaataaaaaaggt |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42629461 |
aagccttctaccaattgaaagaattaacacttagtgttttttcacacaagaggtacatacatgcctttggttattatgatttttaataaataaaaaaggt |
42629362 |
T |
|
| Q |
317 |
attgcttagcatgtataacaatgcaatatatacaa |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42629361 |
attgcttagcatgtataacaatgcaatatatacaa |
42629327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 9575473 - 9575310
Alignment:
| Q |
21 |
aaggagtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnngg |
120 |
Q |
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||||||||||||| ||||||||| || || | || |||| || |||| |||||||||| |||||||||||||| ||||| |||||||| || |
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| T |
9575473 |
aaggagtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggtaaaaagggtgacatattctttagaaaaaagg |
9575374 |
T |
|
| Q |
121 |
ataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga |
184 |
Q |
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| T |
9575373 |
ataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga |
9575310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 41859691 - 41859542
Alignment:
| Q |
24 |
gagtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggata |
123 |
Q |
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|||||||||||||||||||| |||| |||| |||| || |||| ||| |||||||||||||||||| || || ||||| || || ||||| |
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| T |
41859691 |
gagtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttggtaagaaaggagatatgtttttccggaaaaaggata |
41859592 |
T |
|
| Q |
124 |
acaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggt |
173 |
Q |
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| T |
41859591 |
atgaactagttttgtttaatttaagcacccagagaattgaagaccttggt |
41859542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 45866897 - 45867133
Alignment:
| Q |
21 |
aaggagtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnngg |
120 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||| | ||||| || ||||||||| || ||||||| | |||||||||||||| | |
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| T |
45866897 |
aaggagtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattggtaagacgggtgatatattctttagaaaagaag |
45866996 |
T |
|
| Q |
121 |
ataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggcgagagctgccaaataatagtttatgagga |
220 |
Q |
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|| | ||||||||| |||||||||| ||| || |||||||||||||||||||| |||||| | || ||||| |||||||||||| |||| |
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| T |
45866997 |
atgatgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattca------ctttgccagataatagtttataagga |
45867090 |
T |
|
| Q |
221 |
aagccttctaccaattgaaagaattaacaattagtgttttttc |
263 |
Q |
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|||||||||||| |||| ||||| ||||||||| ||||||| |
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| T |
45867091 |
aagccttctaccgattgccagaatcaacaattagacttttttc |
45867133 |
T |
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