View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_34 (Length: 380)
Name: NF15423_low_34
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 23914127 - 23913775
Alignment:
| Q |
17 |
caacatggttattgttggtatgaaaatcaagggaaattaaactagtggtggagttgatgaagaatgagaagtggttgagtgaagaagaaggagggtttgt |
116 |
Q |
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| T |
23914127 |
caacatggttattgttggtatgaaaatcaagggaaatgaaactagtggtggagttgatgaagaatgagaagtggttgagtgaagaagaaggagggtttgt |
23914028 |
T |
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| Q |
117 |
gttagtaatagagaaagtgaaattggttttaaaagagaaagatgaattgggtataagagaaatggggttattgtaaagaagggtgccagagctggaagca |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
23914027 |
gttagtaatagagaaagtgaaactggttttaaaagagaaagatgaattgggtataagagaaatcgggttgttgtaaagaagggtgccggagctggaagca |
23913928 |
T |
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| Q |
217 |
ggaacggtggtggaacgtgtgagaccgacgacaccgtggcggaggaaggagtcgccgaggagggtgatgttgcggagggtgaaagaagagaaggtgaagg |
316 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23913927 |
gggacggtggtggagcgtgtgagaccgacgacaccgtggcggaggaaggagtcgccgaggagggtgatgttgcggagggtgaaagaagagaaggtgaagg |
23913828 |
T |
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| Q |
317 |
ttgtgttttgtgagagtgtggttgggataagaaagaagaggagcgtgatgatg |
369 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23913827 |
ttgtgttttgtgagagtgtggttgggataaggaagaagaggagcgtgatgatg |
23913775 |
T |
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